1. No category

Genome Size
3000
2500
Size (Mbp)
2000
1500
1000
500
0 yeast
fish
snake
human
Sample
bird
oyster
genome
Frequency of variant branches
10-1
Frequency of variant branches in the k-de Bruijn graph
yeast
fish
snake
human
bird
oyster
genome
10-2
10-3
10-4
10-5 20
30
40
50
k
60
70
80
Frequency of repeat branches
10-1
Frequency of repeat branches in the k-de Bruijn graph
yeast
fish
snake
human
bird
oyster
genome
10-2
10-3
10-4
10-5
10-6 20
30
40
50
k
60
70
80
Frequency of error branches
10-1
Frequency of error branches in the k-de Bruijn graph
yeast
fish
snake
human
bird
oyster
genome
10-2
10-3
10-4
10-5 20
30
40
50
k
60
70
80
Mean quality score by position
40
35
Mean Phred Score
30
25
20
15
10
5
00
yeast
fish
snake
human
bird
oyster
genome
20
40
60
80
100
Base position
120
140
160
Fraction of bases at least Q30
1.0
Fraction at least Q30
0.9
0.8
0.7
0.6
0.5
0.4
0.30
yeast
fish
snake
human
bird
oyster
genome
20
40
60
80
100
Base position
120
140
160
0.025
Proportion
0.020
k-mer position of first error
yeast
fish
snake
human
bird
oyster
genome
0.015
0.010
0.005
0.0000
20
40
60
k-mer Position
80
100
120
Per-position error rate
0.035
yeast
fish
snake
human
bird
oyster
genome
0.030
Error rate
0.025
0.020
0.015
0.010
0.005
0.0000
20
40
60
80
100
base position
120
140
160
0.16
0.14
Duplicate Proportion
0.12
0.10
0.08
0.06
0.04
0.02
0.00 yeast
fish
snake
human
Sample
bird
oyster
genome
0.040
Estimated Fragment Size Histogram
yeast
fish
snake
human
bird
oyster
genome
0.035
Proportion
0.030
0.025
0.020
0.015
0.010
0.005
0.0000
200
400
600
Fragment Size (bp)
800
1000
51-mer count distribution
0.25
yeast
fish
snake
human
bird
oyster
genome
Proportion
0.20
0.15
0.10
0.05
0.000
20
40
60
80
100
51-mer count
120
140
160
yeast GC Bias
100
3200
2800
80
k-mer coverage
2400
60
2000
1600
40
1200
800
20
400
00
20
40
GC %
60
80
100
0
fish GC Bias
100
1400
k-mer coverage
80
1200
1000
60
800
40
600
400
20
200
00
20
40
GC %
60
80
100
0
snake GC Bias
200
2700
2400
k-mer coverage
150
2100
1800
1500
100
1200
900
50
600
300
00
20
40
GC %
60
80
100
0
human GC Bias
100
1400
k-mer coverage
80
1200
1000
60
800
40
600
400
20
200
00
20
40
GC %
60
80
100
0
bird GC Bias
100
2000
1750
80
k-mer coverage
1500
1250
60
1000
40
750
500
20
250
00
20
40
GC %
60
80
100
0
oyster GC Bias
200
1050
900
k-mer coverage
150
750
600
100
450
300
50
150
00
20
40
GC %
60
80
100
0
genome GC Bias
k-mer coverage
400
1600
350
1400
300
1200
250
1000
200
800
150
600
100
400
50
200
00
20
40
GC %
60
80
100
0
Simulated contig length N50
50000
Simulated contig lengths in the k-de Bruijn graph
yeast
fish
snake
human
bird
oyster
genome
40000
30000
20000
10000
020
30
40
50
60
k
70
80
90
100