This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. UCLH NHS FOUNDATION TRUST DEPARTMENT OF CLINICAL MICROBIOLOGY USER MANUAL January 2013 Version 4.5 UCL Hospitals is an NHS Foundation Trust incorporating the Eastman Dental Hospital, Elizabeth Garrett Anderson & Obstetric Hospital, The Heart Hospital, Hospital for Tropical Diseases, National Hospital for Neurology & Neurosurgery, The Royal London Hospital for Integrated Medicine and University College Hospital Microbiology User Manual version 4.5 Page 1 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. TABLE OF CONTENTS MISSION STATEMENT _______________________________________________________ 3 INTRODUCTION ____________________________________________________________ 3 LOCATION _________________________________________________________________ 4 POSTAL ADDRESS___________________________________________________________ 4 SERVICES AVAILABLE ______________________________________________________ 5 WORKING HOURS ___________________________________________________________ 7 CONTACTING US DURING WORKING HOURS __________________________________ 7 CONTACTING US OUT OF WORKING HOURS __________________________________ 7 KEY CONTACTS - LABORATORY ______________________________________________ 8 KEY CONTACTS – CONSULTANT MICROBIOLOGISTS___________________________ 8 COMPLAINTS _______________________________________________________________ 8 QUALITY ASSURANCE _______________________________________________________ 8 REQUEST FORMS AND SPECIMEN CONTAINERS ______________________________ 9 WHERE TO COLLECT SPECIMEN CONTAINERS _______________________________ 9 COLLECTION OF SPECIMENS_______________________________________________ 11 TRANSPORT OF SPECIMENS ________________________________________________ 11 COMMUNICATION OF RESULTS_____________________________________________ 11 OTHER SERVICES__________________________________________________________ 12 TURNAROUND TIMES, SPECIMEN TYPES, INVESTIGATIONS & CONTAINERS ___ 12 CONTAINER TYPES ________________________________________________________ 15 REFERENCE LABORATORIES _______________________________________________ 17 Microbiology User Manual version 4.5 Page 2 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. MISSION STATEMENT We aim to provide our users with: A high quality, timely, clinical and diagnostic microbiology laboratory service An expert clinical advisory service for the diagnosis, management and control of infections Assistance with the investigation of infectious disease outbreaks Interesting and novel information relating to microbiology (e.g. antibiotic resistance patterns) A rapid response to comments, requests and complaints INTRODUCTION This guide describes the clinical and laboratory services available to users from the following areas: UCLH NHS Foundation Trust Hospitals: o University College Hospital (UCH) o Eastman Dental Hospital (EDH) o The National Hospital for Neurology and Neurosurgery (NHNN) o The Hospital for Tropical Diseases (HTD) o University College Hospital Elizabeth Garrett Anderson Wing (EGA) o The Heart Hospital (HH) o The Royal London Hospital for Integrated Medicine (RLHIM) o Macmillan Cancer Centre Camden Primary Care Trust (PCT) (Mortimer Market and Archway Sexual Health Clinic) Islington Primary Care Trust (PCT) Camden & Islington Mental Health and Social Care Services Trust Podiatry & Family Planning Services This guide is intended to enable all users to make best use of the various services provided, ensuring an accessible, equitable and efficient service. Our workload Our workload over recent years has continued to increase and alternative testing strategies have been implemented in response to discussions with users and service needs. During 2011, the laboratory processed 383,776 tests. This comprised of: 10.3% General Practice 39.0% In-patient 46.7% Out-patients 4.0% Accident and Emergency Accreditation The Clinical Microbiology department holds full Clinical Pathology Accreditation (CPA Reference number 0767). Microbiology User Manual version 4.5 Page 3 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. LOCATION 60 Whitfield Street Nearest tube stations: Warren Street Tube Station (Northern Line, Victoria Line) Goodge Street Tube Station (Northern Line) POSTAL ADDRESS Department of Clinical Microbiology University College Hospitals NHS Foundation Trust 60 Whitfield Street London W1T 4EU www.uclh.nhs.uk Microbiology User Manual version 4.5 Page 4 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. SERVICES AVAILABLE Routine microscopy, bacterial culture and sensitivity testing: All routine microbiological investigations including: o Blood cultures o CSF for microscopy and culture o Bacteriology culture on swabs, fluids and tissues including: Brain material Wound swabs Respiratory samples including sputum and pleural fluids Genital cultures, including IUCDs Faecal cultures for enteric pathogens o Fluids for Polarizing Microscopy o Urine culture Molecular MRSA detection: For routine screening using nose swabs, please refer to the Virology user manual Routine mycology: Including Skin scrapings/Nail clippings Microscopy and culture for dermatophytes Extended culture for unusual exotic fungi Antibiotic and antifungal routine assay referral Molecular Chlamydial and Gonococcal testing and other STI investigations: Please refer to the Virology user manual Serological and rapid antibody/antigen detection: Serological investigations for Clinical Microbiology include: o Clostridium difficile (Toxin and GDH) testing. o Cryptococcal antigen (CRAG) test on serum and CSF o Urine test for legionella and pneumococcal antigen Antibiotic assays testing: o Gentamicin o Amikacin o Vancomycin Test performed in Biochemistry. For clinical advice please contact Clinical Microbiology Department. Mycobacterial investigations: Routine microscopy of all specimens for Mycobacterium species Rapid detection of Mycobacterium species using a liquid culture system Blood culture for all mycobacterial species All isolates are sent to the HPA Mycobacterium Reference Unit (MRU) for speciation and antibiotic sensitivity testing Quantiferon testing is available upon request. Please consult with Microbiology clinical team in advance. Microbiology User Manual version 4.5 Page 5 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. Environmental investigations Hydrotherapy pool water testing Reference Laboratory Liaison Many investigations including some molecular tests are available at various reference facilities throughout the United Kingdom. If an investigation you require is not on this list, please call the microbiology department for advice. We will receive the specimen in our laboratory and refer it to the most appropriate reference facility. Clinical Advice Medical staff are available in the laboratory during working hours and on-call (out of hours) to discuss cases and provide guidance on the diagnosis and management of infectious diseases. Microbiology User Manual version 4.5 Page 6 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. WORKING HOURS Regular working hours are Monday to Friday, 9 am to 5 pm, and Saturdays, 9 am to 4 pm. If urgent investigations are required outside these times, there is an emergency on-call service available 24 hours a day, 7 days a week. During bank and public holidays, the department offers an emergency service only. However some routine investigations may be processed during these periods. CONTACTING US DURING WORKING HOURS To contact us regarding laboratory enquiries - 020 3447 9913 or 020 3447 9651 To contact us for medical advice Registrars office Within UCLH Fax: 020 344 79515 direct ext 79515 020 344 79211 To contact us about general departmental enquiries Admin office Fax: 020 344 79912 020 344 79211 CONTACTING US OUT OF WORKING HOURS On call Biomedical Scientist: Air call bleep through switchboard: 0845 155 5000 / 020 3456 7890 On Call Specialist Registrar: Contact through switchboard, see above numbers On Call Microbiology Consultant: Contact through switchboard, see above numbers When using the out of hours service for requesting urgent laboratory investigations, please make sure you contact the duty BMS in advance and inform them that a sample is on its way. Microbiology User Manual version 4.5 Page 7 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. KEY CONTACTS - LABORATORY Microbiology Laboratory Service Manager Mr. Massimo Bonaiti [email protected] 020 7307 7312 KEY CONTACTS – CONSULTANT MICROBIOLOGISTS Clinical Lead Dr. Bruce Macrae [email protected] 020 344 79912 COMPLAINTS If you wish to make a complaint, please contact the Laboratory Service Manager as detailed in the earlier section and your complaint will be dealt with promptly. QUALITY ASSURANCE The laboratory is fully accredited by The Clinical Pathology Accreditation (CPA) (UK) Ltd. For full details please refer to the CPA website www.cpa-uk.co.uk. This accreditation is an external audit of our ability to provide a service of high quality in meeting all the necessary performance standards. The results sent out by this laboratory are of the highest possible quality. To this end we have a Quality Management System (QMS) and participate in the UK National External Quality Assurance Scheme (UKNEQAS) and Quality Control for Molecular Diagnostics (QCMD) for a wide range of microbiological investigations. UKNEQAS/QCMD are central organisations that operate on a country wide basis and monitors our performance regularly by sending simulated samples for analysis. Our results and ongoing performance are available for inspection. The Department holds a monthly Quality Committee meeting where internal and external quality is monitored. The meeting receives reports on audits of the quality system and looks at turnaround times and error reports. A full time dedicated Specialty Quality Manager is responsible for ensuring that high standards are maintained throughout our services. All testing procedures and results are subject to strict internal quality control and regular audits. User Surveys are undertaken to receive feedback on the service and to review testing profiles and indicate where improvements to the overall service may be made. Microbiology User Manual version 4.5 Page 8 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. REQUEST FORMS AND SPECIMEN CONTAINERS To enable us to provide a high quality result, it is essential that a correctly labelled form and specimen are received in the laboratory. If specimens are accompanied by the wrong request form, this will result in unnecessary delays or loss of specimen. Request forms are clearly labelled as “Microbiology” request forms and have a bag attached for the specimen. If more than one examination is required, please send separate request forms and specimens for each investigation to prevent delays in testing. Do not use pins or staples as this is hazardous. Please ensure that the correct sample container is used. A full pictorial guide to sample containers can be found at the end of this user guide. Complete patient details must be clearly marked on BOTH the request form AND the specimen container before insertion into the plastic bag and sealed ready for transportation. The minimum data we require for patient details are: Hospital Number (for GP’s – NHS number is required) Patient surname AND first name (please use ONLY capital letters) Date of Birth Sex You must provide contact details of the person requesting an investigation. If there is no ward details or appropriate contact number on a request form the Clinical Microbiology cannot guarantee contacting the requestor. It is essential that the proper clinical samples are collected at the appropriate time. This enables as accurate a diagnosis as possible to be made. It will also guide the laboratory with regard to what tests should be performed. The importance of accuracy when completing the form, labelling the specimen, and the provision of relevant clinical details including antibiotic chemotherapy cannot be overemphasised. For patient safety reasons, mislabelled specimens will not be processed. WHERE TO COLLECT SPECIMEN CONTAINERS a) FOR GP BASED REQUESTS Dermapak A DERMAPAK fungal specimen collection pack will be sent via the post upon submission of a written or telephoned request to Clinical Microbiology. Request for other laboratory consumables For routine GP requests for all laboratory consumables (urine pots, swabs, request forms etc), please complete proforma list (A) and fax to Interserve (020 3447 7793) who will arrange for items to be supplied. Any queries telephone Interserve on Hospital extension Microbiology User Manual version 4.5 Page 9 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. 77791. There are no facilities within the Clinical Microbiology Department to supply collection kits for all other specimen types. b) FOR UCLH BASED REQUESTS Blood cultures Clinical Microbiology supply blood cultures to the following wards, T01, T03, T08, T13N and T16S. These wards hold the stock for the Hospital. Paediatric blood cultures are stocked by NNU (ITU) Stocks on these wards are supplied from Microbiology and are restocked each Thursday. Bottles are available for all wards and departments who wish to use them. Please avoid “stocking up” in a particular location as the bottles do have an expiry date and out of date bottles will not be tested if received. Blood culture bottles may be requested for use from the Heart Hospital and St Pancras. One box of aerobic and anaerobic culture bottles is sent to the Heart Hospital ITU via the usual courier services when a request is received. St Pancras will phone up in advance and send across a courier to pick up 6 sets of culture bottles for use. Blood culture bottles for NHNN wards are stored in the NHNN phlebotomy department. Any queries should be directed to Stephanie O’Donnell on x83398. HTD OPD can contact the department to arrange stock Mortimer Market blood cultures bottles and mycobacteria bottles are stored in the ‘hotlab’ for use in Mortimer Market and Bloomsbury clinics TB Blood cultures/TB EMU bottles Stocks are no longer kept in Microbiology and all requests for supplies should be referred to T8 (x70800) where small numbers of bottles are kept for use. Request for laboratory consumables For the main UCH site, all stock laboratory specimen containers for ward use may be obtained via NHS Logistics. Please note: The laboratory does not keep supplies of consumables for ward use. Microbiology User Manual version 4.5 Page 10 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. COLLECTION OF SPECIMENS To enable us to provide you with the best quality results, it is essential that good specimens are collected properly, at the appropriate time and before the administration of antibiotics. It is also important that they are transported to the laboratory without undue delay. This enables the laboratory and the medical staff to provide a meaningful report and an interpretation relevant to the patient's illness. Inappropriate specimens (i.e. vomit, nasal discharge, Foley’s catheter tip) or those that are damaged or leaking are liable to be discarded. Should this occur, every attempt will be made to inform the user that, if appropriate, a second specimen may be required? If unsure which specimen type to examine or how to collect a particular specimen type, please contact the laboratory (020 344 79651) for advice. High Risk Specimens High risk specimens should be sent to the laboratory using appropriate packaging. Please discuss with the Clinical Microbiologists if there is significant risk for example Viral Heamorrhagic Fever (VHF) or Creutzfeldt–Jakob disease (CJD). TRANSPORT OF SPECIMENS Please refer to your local transport policy and arrangements. This is available on the UCLH Foundation Trusts Intranet site. Specimens should be sent direct to the Clinical Microbiology Reception at 60 Whitfield Street. Generally, specimens that are not sent within two hours of taking (excluding blood cultures) must be stored in a fridge at +4oC until transported to the laboratory. Please contact the laboratory if there are specific questions regarding transportation of specimens. Routine specimens from UCLH should be sent via the pneumatic tube system. Samples from other sites, including GPs, should be sent using the regular courier service to the 60 Whitfield Street reception. Urgent out of hour’s samples MUST be sent to the Clinical Microbiology Laboratory by courier. Failure to do so may mean that samples may be delayed in processing. The sender is responsible for ensuring the health and safety of any courier or taxi service that is used to transport samples to the Clinical Microbiology laboratory. If specimens are to be brought to specimen reception personally by medical or nursing staff they must be carried in an approved container for transport. COMMUNICATION OF RESULTS All clinically relevant and urgent positive results are telephoned out to our users by one of the medical staff. For reasons of confidentiality, results are only faxed to “safe-haven fax numbers”. Microbiology User Manual version 4.5 Page 11 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. OTHER SERVICES Advice concerning disinfection, sterilisation, infection and environmental control are also available at any time from the Medical Microbiologists. Samples may be referred to HPA Reference laboratories for more specific tests where routine testing at UCLH is not provided. TURNAROUND TIMES, SPECIMEN TYPES, INVESTIGATIONS & CONTAINERS Expected turnaround times are given as working days and are based on the time of arrival in the Clinical Microbiology Laboratory, 60 Whitfield Street. Exceptions are specimens for TB and Serology, which are processed on weekdays only. Where appropriate, turnaround times are given for microscopy. Turnaround times for culture are given with a range of times. The lower figure is for a “negative” result (where there has been no follow up of an isolate) and the higher for a “positive” result (where an isolate has been followed up, identified and antibiotic sensitivities determined). Exceptions are mycobacterial culture and blood culture where a negative result is only issued at the end of the full incubation period. Fungal culture results are automatically issued (negative) at 14 days but some may be kept for 4-6 weeks. The following table indicates expected turnaround times and the types of specimen containers that should be used for diagnostic testing. The container types are illustrated in the pictures that follow. Any special handling requirements prior to receipt in microbiology and key factors known to affect the performance of tests are listed in the table below. Please note that we do not keep all samples once tested so if extra tests are required please phone the laboratory (020 3447 9913) at the earliest opportunity to request the additions, please see table below for approximate sample retention times Sample type Container Anaerobe investigations Swab B, Pus C & D Blood for culture F, G Blood for serology E Blood: antibiotic levels (Gent / Vanc / Amik) E Microbiology User Manual version 4.5 Specimen Retention time Expected Turnaround time/Notes Preliminary isolation: 2-4 days Full identification and susceptibility: 2-4 additional days Cultures: kept up for a total of 5 days Identification and susceptibility within 2 days of growth. Ensure Blood cultures are collected using aseptic technique. Never place blood cultures in the refrigerator. In-house: varies according to test Reference Laboratory: may take up to 14 days Please consult laboratory for individual turnaround time Same day testing >95% of samples. (tested in Biochemistry) Please contact the Microbiology doctors for interpretation of antibiotic levels. It is important to state time and dose regime to aid in interpretation. Other antibiotic assays are sent away for testing, may Page 12 of 18 7 days Minimum 2 days 7 days 7 days Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. Catheter tips / lines C, D Cerebrospinal fluid C Eye / Ear swabs Faeces A C and D Faeces for C.difficile (Toxin and GDH). C and D Fluid / Aspirates / Pus (synovial, pleural, bile, etc.) Genital swabs (HVS) Genital swabs (Cervical) Genital swabs (male urethral) Hydrotherapy Pool Water IUCD Leprosy – slit skin smear MRSA screen: agar Tissue, bone, biopsies etc. Tissue etc. for mycology 7 days 7 days M 2-4 days 7 days J 2-4days 1 day 2-4 days. Extended cultures for Actinomyces spp. 7 days 5 days from receipt in lab 2 years 2-4 days. 7 days 2-4 days Cultures: kept up for a total of 7 days. 2–3 days to identify following initial isolation. Specialist culture media required eg B. pertussis. Please contact the Microbiology Department before sending. Full identification within 3 days of culture Microscopy: 1 working day Culture: within 28 days Identification within 2 weeks of culture 2-4 days 2-4 days. Cultures extended for F. necrophorum investigation. Microscopy: 1 working day 2-4 days Cultures: kept up for 4 weeks Cultures: kept up for 6 weeks Identification within 1 week and susceptibilities within 3 weeks of growth Auramine: 1 working day Liquid Cultures: kept up for 6 weeks Identification within 1 week and susceptibilities within 3 weeks of growth 2 days Microscopy is not performed Liquid Cultures: kept up for 6 weeks Identification within 1 week and susceptibilities within 7 days D Inoculated smears A C and D K C and D A C and D C and D TB: Blood and bone marrow H TB: Cerebrospinal fluid C TB: Drug compliance TB: Early morning Urine (EMU) 7 days 2-4 days 2-4 days L Throat swab 7 days 7 days A B Pernasal swab Sputum or BAL 3 months 7 days A Skin, nails, hair for fungi 7 days Microscopy: 1 working day 2–4 days C and D Neonatal swabs Prosthetic heart valve take up to 14 days. 2-4 days Microscopy: same day Cultures: kept up for a total of 5 days Identification and susceptibilities within 2 days of growth. At least 0.5ml of CSF is required for optimal testing. CSFs received >24 hours after collection are unsuitable for cell count. 2-4 days 2-4 days Same day testing >95% of samples Batched and tested daily Mon – Sun with a same day result C and D I Microbiology User Manual version 4.5 Page 13 of 18 7 days 1 month 7 days 7 days 7 days 1 month 1 month 6 weeks 6 weeks 7 days 7 days Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. 3 weeks of growth TB: Fluid / Aspirates / Pus TB: Sputum or BAL TB: Tissues Urine: MSU or CSU Urine antigen testing (Legionella or pneumococal) Wound swab C C and D C and D D C and D A Microbiology User Manual version 4.5 Auramine: 1 working day Liquid Cultures: kept up for 6 weeks Identification within 1 week and susceptibilities within 3 weeks of growth 1-2 days 1-2 days ONLY by prior agreement with the Microbiology doctor. 2-4 days Page 14 of 18 6 weeks 1 month 6 weeks 2 days 7 days 7 days Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. CONTAINER TYPES For key to container types, please refer to table above. B A Transwab (clear jelly) Charcoal Transwab (black jelly) C D Sterile universal container (60ml) Sterile universal container (30ml) E F 7 ml clotted blood containers Adult bottle set (blue and purple tabs) G Paediatric bottle (pink tab) Microbiology User Manual version 4.5 H Mycobacteria blood culture bottle (Bactec Myco/F – lytic) with Red tab Page 15 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. I J Hydrotherapy pool water container EMU container (contains Tannic acid) K L Pernasal swab for pertussis culture only Dermapak M Male Genital (orange) swab pack Microbiology User Manual version 4.5 Page 16 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. REFERENCE LABORATORIES The following Reference Laboratories are used for confirmation and specialist testing services. Addresses of the laboratories that we refer samples to are available on request. For any test not listed in the sections below refer to the HPA website which has a reference of Specialist Reference Microbiology Tests and Services: http://www.hpa.org.uk/ProductsServices/InfectiousDiseases/MicrobiologicalTestsAndServices/c fiIndexTestsServicesMicrobio/ SEROLOGY (based on name of organism) Anaplasma Lyme reference Laboratory, Southampton General Hospital Aspergillus Mycology Reference Centre, Leeds Avian Mycology Reference Centre, Leeds Bartonella Respiratory and Systemic Infection Laboratory, Colindale Blastomyces Mycology Reference Laboratory, Bristol Bordetella Respiratory and Systemic Infection Laboratory, Colindale Brucella Brucella Reference Unit (BRU), Liverpool Campylobacter Microbiology Laboratory, Royal Preston Hospital, Preston Candida Mycology Reference Centre, Leeds Corynebacterium diphtheriae Streptococcus & Diphtheria Reference Unit, Colindale Clostridium tetani (tetanus) Respiratory and Systemic Infection Laboratory, Colindale Coccidioides Mycology Reference Laboratory, Bristol Coxiella Special Pathogens Reference Unit, Porton Down E coli O157 Laboratory for Enteric Pathogens, Colindale Francisella Special Pathogens Reference Unit, Porton Down Histoplasma Mycology Reference Laboratory, Bristol Legionella Atypical Pneumonia Unit, HPA, Colindale Leptospira Leptospirosis Reference Laboratory, Hereford Neisseria meningitidis Meningococcal Reference Unit, Manchester Paracoccidioides Mycology Reference Laboratory, Bristol Rickettsia Special Pathogens Reference Unit, Porton Down Staphylococcus aureus Laboratory of HealthCare Associated Infection, Colindale Streptococcus pneumoniae City Hospital, Dudley Road, Birmingham Treponema (syphilis) Sexually Transmitted Bacteria Reference Laboratory, Colindale Toxoplasma Toxoplasma Reference Laboratory (TRL), Swansea Yersinia Laboratory for Enteric Pathogens, Colindale Microbiology User Manual version 4.5 Page 17 of 18 Review date: January 2014 This is a CONTROLLED document. Any document appearing in paper form that is not printed on green paper is not controlled and should not be used. ANTIBIOTIC AND ANTIFUNGAL LEVELS Streptomycin Other antibiotic levels Antimicrobial Reference Laboratory, Bristol Tobramycin Royal London Hospital, London Itraconazole, Amikacin, Gentamicin, Teicoplanin Royal Free Hospital, London 5 Flucytosine, Itraconazole, Voriconazole Mycology Reference Laboratory, Bristol CULTURE OR SPECIMENS Anaerobes / Actinomyces Anaerobe Reference Laboratory, Cardiff Bacillus anthracis Special Pathogens Reference Unit, Porton Down Bartonella Atypical Pneumonia Unit, RSIL, Colindale Bordetella Atypical Pneumonia Unit, RSIL, Colindale Campylobacter Laboratory for Enteric Pathogens, Colindale Chlamydia (respiratory) Atypical Pneumonia Unit, RSIL, Colindale Corynebacterium diphtheriae Respiratory and Systemic Infection Laboratory, Colindale E coli O157 Laboratory for Enteric Pathogens, Colindale Haemophilus Haemophilus Reference Unit, Colindale Helicobacter spp. Laboratory for Enteric Pathogens, Colindale Legionella Atypical Pneumonia Unit, RSIL, Colindale Mycology Mycology Reference Laboratory, Bristol Mycoplasma Atypical Pneumonia Unit, RSIL, Colindale Neisseria gonorrhoeae Sexually Transmitted Bacteria Reference Laboratory, Colindale Neisseria meningitidis Meningococcal Reference Unit, Manchester Salmonella species Laboratory for Enteric Pathogens, Colindale Shigella species Laboratory for Enteric Pathogens, Colindale Streptococcus pneumoniae Streptococcus & Diphtheria Reference Unit, Colindale Yersinia Laboratory for Enteric Pathogens, Colindale For antibiotic resistance testing Antibiotic Resistance Monitoring and Reference Laboratory, Colindale For typing Laboratory of HealthCare Associated Infection Epidemiological Typing Unit, Colindale 16S rDNA PCR Microbiology Laboratory, Great Ormond Street Hospital Microbiology User Manual version 4.5 Page 18 of 18 Review date: January 2014
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