1. No category

Publications from the MBAS program of TIGP
I. Refereed Papers (66 since 2007)
1 Mazen Alazem, Kuan-Yu Lin, and Na-Sheng Lin* (2014) The Abscisic Acid Pathway Has
Multifaceted Effects on the Accumulation of Bamboo mosaic virus. Molecular plant-microbe
interactions 27:177-189 (IF: 4.455; Rank: 9% in Plant sciences).
2
Mazen Alazem and Na-Sheng Lin* (2014) Roles of plant hormones in the regulation of host–virus
interactions. Molecular Plant Pathology doi: 10.1111/mpp.12204 (IF: 4.485; Rank: 8.54% in Plant
sciences).
3
Chiung-Yun Chang, Wen-Dar Lin* and Shih-Long Tu* (2014) Genome-wide analysis of
heat-sensitive alternative splicing in Physcomitrella patens. Plant Physiology doi:10.1104/
pp.113.230540 (IF: 7.084, Rank: 3 % in Plant sciences)
4
Lin-Ya Huang, Shih-Hsien Huang, Ya-Chih Chang, Wei-Chieh Cheng, Ting-Jen R. Cheng, and
Chi-Huey Wong* (2014) Enzymatic synthesis of lipid II and analogues. Angew Chem Int Ed Engl
53:8060-8065 (IF: 11.336, Rank: 7 % in Chemistry, Multidisciplinary)
5
Wei-Yi Lin†, Teng-Kuei Huang†, Shang-Jye Leong†, and Tzyy-Jen Chiou* (2014)
Long-distance Call from Phosphate:Systemic Regulation of Phosphate Starvation Responses.
Journal of Experimental Botany 65(7):1817-1827. doi: 10.1093/jxb/ert431. Epub 2013 Dec 24.
(IF:5.242; Rank: 13% in Plant sciences) (†: equal contribution)
6
Tzu-Yin Liu, Wei-Yi Lin, Teng-Kuei Huang, and Tzyy-Jen Chiou* (2014) MicroRNA-mediated
surveillance of phosphate transporters on the move. Trends in Plant Science 19: 647-655 (IF: 13.479,
Rank: 1% in Plant sciences)
7
Yao-Pin Lin, Tsung-yuan Lee, Ayumi Tanaka and Yee-yung Charng (2014) Analysis of an
Arabidopsis heat-sensitive mutant reveals that chlorophyll synthase is involved in reutilization of
chlorophyllide during chlorophyll turnover. Plant Journal 80: 14-26. (IF: 6.815, Rank: 3.6 % in
Plant sciences)
8
Tean-Hsu Chang*, Wen-Sui Lo*, Chuan Ku, Ling-Ling Chen, and Chih-Horng Kuo* (2014)
Molecular evolution of the substrate utilization strategies and putative virulence factors in
mosquito-associated Spiroplasma species. Genome Biology and Evolution 6: 500–509. *Equal
contribution. (IF: 4.759; Rank: 16.7% in Genetics & Heredity)
9
Munkhtsetseg Tsednee, Shun-Chung Yang, Der-Chuen Lee, and Kuo-Chen Yeh * (2014)
Root-secreted nicotianamine from Arabidopsis halleri facilitates zinc hypertolerance by regulating
zinc bioavailability. Plant Physiology 166: 839-852 (IF: 7.084, Rank: 3 % in Plant sciences)
10
Tzi-Yuan Wang†, Chih-Jen Huang†, Hsin-Liang Chen†, Po-Chun Ho, Huei-Mien Ke, Hsing-Yi
Cho, Sz-Kai Ruan, Kuo-Yen Hung, I-Li Wang, Ya-Wun Cai, Huang-Mo Sung, Wen-Hsiung Li* and
Ming-Che Shih (2013) Systematic screening of glycosylation- and trafficking-associated gene
knockouts in Saccharomyces cerevisiae identifies mutants with improved heterologous exocellulase
activity and host secretion. BMC Biotechnology 2013, 13:71,doi: 10.1186/1472-6750-13-71 (IF: 2.17;
Rank: 34.54% in Biotechnology & Applied Microbiology) (†: Equal contribution)
11
Wei-Jen Chang, Yi-Fang Wang, Huei-Jyun Hu, Jung-Hsuan Wang, Tsung-Han Lee, and
Pung-Pung Hwang* (2013) Compensatory regulation of Na+ absorption by Na+/H+ exchanger and
Na+-Cl- cotransporter in zebrafish (Danio rerio). Frontiers in Zoology, 10: 46. (IF: 3.871; Rank:
1.34% in Zoology)
12
Yi-Fang Chiu, Yung-Han Chen, Mercedes Roncel, Preston L. Dilbeck, Jine-Yung Huang,Shyue-Chu
Ke, José M. Ortega, Robert L. Burnap, Hsiu-An Chu* (2013) Spectroscopic and functional
characterization of cyanobacterium Synechocystis PCC 6803 mutants on the cytoplasmic-side of
cytochrome b559 in photosystem II. Biochimica et Biophysica Acta (BBA) - Bioenergetics
1827:507–519. (IF: 4.843; Rank: 21.7% in Biochemistry & Molecular Biology)
13
Yu-Hsin Hsieh, Sheng-Yang Wang* (2013) Lucidone from Lindera erythrocarpa suppresses
adipogenesis in 3T3-L1 cells and attenuates obesity and consequent metabolic disorders in high-fat
diet C57BL/6 mice. Phytomedicine 20:394-400. (IF: 3.268; Rank: 12.63% in Plant Science)
14
Teng-Kuei Huang, Chia-Li Han, Shu-I Lin, Yu-Ju Chen, Yi-Chuan Tsai, Yet-Ran Chen, June-Wei
Chen, Wei-Yi Lin, Pei-Mien Chen, Tzu-Yin Liu, Ying-Shin Chen, Ching-Mei Sun and Tzyy-Jen
Chiou* (2013) Identification of Downstream Components of Ubiquitin-Conjugating Enzyme
PHOSPHATE2 by Quantitative Membrane Proteomics in Arabidopsis Roots The Plant Cell 25(10):
4044-4060. (IF: 9.251, ranking:2 % in plant sciences)
15 Wei-Yi Lin, Teng-Kuei Huang, and Tzyy-Jen Chiou* (2013) NITROGEN LIMITATION
ADAPTATION, a target of microRNA827, mediates degradation of plasma membrane-localized
phosphate transporters to maintain phosphate homeostasis in Arabidopsis. The Plant Cell 25(10):
4061-4074. (IF: 9.251, ranking:2 % in plant sciences)
16
Wen-Sui Lo, Chuan Ku, Ling-Ling Chen, Tean-Hsu Chang, and Chih-Horng Kuo* (2013)
Comparison of metabolic capacities and inference of gene content evolution in mosquito-associated
Spiroplasma diminutum and S. taiwanense. Genome Biology and Evolution 5: 1512–1523. (IF: 4.759;
Rank: 16.7% in Genetics & Heredity)
17
Wen-Sui Lo, Ling-Ling Chen, Wan-Chia Chung, Gail E Gasparich and Chih-Horng Kuo*
Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybee-associated
bacterium. (2013) BMC Genomics 14:22. (IF: 4.07; Rank: 16% in Biotechnology & Applied
microbiology)
18
Kalaipandian Sundaravelpandian, Nulu Naga Prafulla Chandrika, and Wolfgang Schmidt* (2013)
PFT1, a transcriptional Mediator complex subunit, controls root hair differentiation through reactive
oxygen species (ROS) distribution in Arabidopsis. New Phytologist Volume 197, Issue 1. (IF: 6.645;
Rank: 4. 6% in Plant Science)
19 Nulu Naga Prafulla Chandrika, Kalaipandian Sundaravelpandian, Su-May Yu and Wolfgang
Schmidt* (2013) ALFIN-LIKE 6 (AL6) is involved in root hair elongation during phosphate
deficiency in Arabidopsis. New Phytologist (IF: 6.645; Rank: 4.6% in Plant Science)
20
Yong-Yi Chen, Ying Wang, Lung-Jiun Shin, Jing-Fen Wu, Varanavasiappan Shanmugam,
Munkhtsetseg Tsednee, Jing-Chi Lo, Chyi-Chuann Chen, Shu-Hsing Wu and Kuo-Chen Yeh* (2013)
Iron is essential to maintain the circadian period length of the central oscillator in Arabidopsis. Plant
Physiology 161: 1409-1420. (IF: 6.535; Rank:6/190 in Plant Sciences)
21
Pablo Bolaños-Villegas, Xiaohui Yang, Huei-Jing Wang, Chien-Ta Juan, Min-Hsiang Chuan,
Christopher A. Makaroff and Guang-Yuh Jauh* (2013) Arabidopsis CHROMOSOME
TRANSMISSION FIDELITY 7 (AtCTF7/ECO1) is required for DNA repair, mitosis and meiosis.
Plant Journal (in press) (IF: 6.16; Rank: 3.6% in plant science).
22
Govinal Badiger Bhaskara, Thao Thi Nguyen, and Paul E. Verslues* (2012) Unique drought
resistance functions of the highly ABA-induced Clade A Protein phosphatase 2Cs. Plant physiology
160:379-395. (IF: 6.535; Rank: 3.68% in Plant Sciences)
23
Yu-Hsin Hsieh, Kuan-Jung Chen, Shih-Chang Chien, Wen-Ling Cheng, Jun-Hong Xiao and
Sheng-Yang Wang* (2012) ACTA Inhibitory Activity of Exudate from Calocedrus macrolepis Kurz
var. formosana. Natural Product Communications 7:1573-1574. (IF: 1.242; Rank: 46.88% in Food
Science & Technology)
24
Nien-Chen Huang, Wann-Neng Jane, Jychian Chen, and Tien-Shin Yu* (2012) Arabidopsis
thaliana CENTRORADIALIS homologue (ATC) acts systemically to inhibit floral initiation in
Arabidopsis. Plant Journal, DOI: 10.1111/j.1365-313X.2012.05076.x. (IF: 6.16; Rank: 10% in Plant
Sciences)
25
Tzu-Yin Liu, Teng-Kuei Huang, Ching-Ying Tseng, Ya-Shiuan Lai, Shu-I Lin, Wei-Yi Lin,
June-Wei Chen, and Tzyy-Jen Chiou* (2012) PHO2-Dependent Degradation of PHO1 Modulates
Phosphate Homeostasis in Arabidopsis. Plant Cell, Vol. 24: 2168–2183 (IF: 8.987; Rank: 2.2% in
Plant Sciences)
26
Wai-Leng Lee and Lie-Fen Shyur* (2012) Deoxyelephantopin impedes mammary adenocarcinoma
cell motility through inhibiting calpain-mediated adhesion dynamics and inducing ROS and
aggresome formation. Free Radical Biology & Medicine 52: 1423-1436 (IF: 5.423; Rank: 16.96% in
Biochemistry & Molecular Biology)
27
Ming-Jung Liu, Szu-Hsien Wu, Ho-Ming Chen, and Shu-Hsing Wu* (2012) Widespread
translational control contributes to the regulation of Arabidopsis photomorphogenesis. Molecular
Systems Biology 8:566. (IF: 9.667; Rank: 19% in Biochemistry and Molecular Biology)
28
Kuan-Ju Lu, Nien-Chen Huang, Yu-Shan Liu, Chung-An Lu, and Tien-Shin Yu* (2012)
Long-distance movement of Arabidopsis FLOWERING LOCUS T RNA participates in systemic
floral regulation. RNA Biology Volume 9, Issue 5. (IF: 5.597; Rank: 16.8% in Biochemistry &
Molecular biology)
29
Saminathan Thangasamy, Pei-Wei Chen, Ming-Hsing Lai, Jychian Chen, and Gurang-Yuh Jauh*
(2012) Rice LGD1 containing RNA binding activity affects growth and development through
alternative promoters. The Plant Journal 71, 288-302. (IF: 6.815, Rank: 3.5% in Plant Sciences)
30
Munkhtsetseg Tsednee, Yit-Wai Mak, Yet-Ran Chen, and Kuo-Chen Yeh* (2012) A sensitive
LC-ESI-Q-TOF-MS method reveals novel phytosiderophores and phytosiderophore–iron complexes
in barley. New Phytologist 195: 951-961.(IF: 6.645; Rank: 10% in Plant Sciences)
31
Wei-Jen Chang and Pung Pung Hwang* (2011) Development of zebrafish epidermis. Birth Defects
Res (Part C) 93: 205-214. (Rank: 33% in Developmental Biology)
32
Ya-Ling Lin, Shu-Chiun Sung, Hwang-Long Tsai, Ting-Ting Yu, Ramalingam Radjacommare, Raju
Usharani, Antony S. Fatimababy, Hsia-Yin Lin, Ya-Ying Wang, and Hongyong Fu* (2011) The
defective proteasome but not substrate recognition function is responsible for the null phenotypes of
the Arabidopsis proteasome subunit RPN10. Plant Cell 23: 2754–2773. (IF: 9.396; Rank: 2.66% in
Plant Sciences)
33
Shu-Yi Yin, Chien-Yu Wang, and Ning-Sun Yang* (2011) Interleukin-4 enhances trafficking and
functional activities of GM-CSF-stimulated mouse myeloid-derived dendritic cells at late
differentiation stage. Experimental Cell Research 317(15):2210-2221. (IF: 3.6; Rank: 50% in Cell
Biology & Oncology)
34
Arun Kapoor, Wen-Ming Hsu, Bo-Jeng Wang, Guan-Hsun Wu, Ti-Yu Lin, Shyh-Jye Lee,
Chen-Tung Yen, Shu-Mei Liang, and Yung-Feng Liao* (2010) Caveolin-1 regulates γ-secretase
activity by modulating spatial distribution of γ-secretase in membrane. Journal of Alzheimer’s
Disease DOI: 10.3233/JAD-2010-100531. (IF: 3.83; Rank: 27.3% in Neuroscience)
35
J.J. Emerson, Li-Ching Hsieh, Huang-Mo Sung, Tzi-Yuan Wang, Chih-Jen Huang, Henry
Horng-Shing Lu, Mei-Yeh Jade Lu, Shu-Hsing Wu, and Wen-Hsiung Li* (2010) Natural selection
on cis and trans regulation in yeasts. Genome Res 20: 826-836. (IF:13.588 ; Rank: 3.85% in Genetics
and Heredity)
36
Chih-Chung Yen, Conmar C. Malmis, Guan-Chiun Lee, Li-Chiun Lee, and Jei-Fu Shaw* (2010)
Site-Specific Saturation Mutagenesis on Residues 132 and 450 of Candida rugosa LIP2 Enhances
Catalytic Efficiency and Alters Substrate Specificity in Various Chain Lengths of Triglycerides and
Esters. Journal of Agricultural and Food Chemistry 58, 10899-10905. (IF: 2.469)
37
Yueh-Lung Wu, Carol P. Wu, Song-Tay Lee, Han Tang, Chi-Hua Chang, Hong-Hwa Chen, and
Yu-Chan Chao* (2010) The Early Gene hhi1 Reactivates Heliothis zea Nudivirus 1 in Latently
Infected Cells. Journal of Virology 84: 1057-1065. (IF: 5.189, Rank: 15% in Virology)
38
Saminathan Thangasamy, Cian-Ling Guo, Ming-Hsiang Chuang, Ming-Hsing Lai, Jychian Chen,
Guang-Yuh Jauh* (2010) Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through
regulation of anther dehiscence. New Phytologist, 189: 869-882 (IF: 6.516, Rank: 4.5% in Plant
Science)
39
S.C. Hsu, T.C. Cheng, Pablo Bolaños-Villegas, Shin-Wen Chin, and Fure-Chyi Chen* (2010) Pollen
meiotic behavior in relation to Phalaenopsis breeding. Acta Horticulturae 878:139-143. (IF:0.040;
Rank: 0.029% in Horticulture).
40
Rajanbabu V, Pan CY, Lee SC, Lin WJ, Lin CC, Li CL, and Chen JY* (2010) The tilapia hepcidin
2-3 peptide modulates lipopolysaccharide (LPS)-induced cytokines and inhibits tumor necrosis
factor (TNF)-alpha through cyclooxygenase (COX)-2 and phosphodiesterase (PDE)4D. J Biol Chem
285(40):30577-86. (IF: 5.328; Rank: 16.9% in Biochemistry and Molecular Biology)
41 Rajanbabu V and Chen JY* (2010) Antiviral function of tilapia hepcidin 1-5 and its modulation of
immune-related gene expressions against infectious pancreatic necrosis virus (IPNV) in Chinook
salmon embryo (CHSE)-214 cells. Fish & Shellfish Immunol DOI:10.1016/j.fsi.2010.09.005. (IF:
3.044; Rank: 2.1% in Veterinary Sciences; 4.7% in Fisheries)
42
Pan CY, Rajanbabu V, Chen JY, Her GM, and Nan FH* (2010) Evaluation of the epinecidin-1
peptide as an active ingredient in cleaning solutions against pathogens. Peptides 31(8):1449-58. (IF:
2.654; Rank: 39.2% in Pharmacy and Pharmacology)
43
Rajanbabu V, and Chen JY* (2010) The antimicrobial peptide, tilapia hepcidin 2-3 (TH2-3), and
PMA differentially regulate protein kinase C (PKC) isoforms, TNF-α and COX-2 in mouse
RAW264.7 macrophage cells. Peptides. (IF: 2.654; Rank: 39.2% in Pharmacy and Pharmacology)
44
Rajanbabu V, and Chen JY* (2010) Applications of antimicrobial peptides from fish and
aquaculture organisms and perspectives for the future. Peptides (IF: 2.654; Rank: 39.2% in
Pharmacy and pharmacology)
45
Chang WT, Pan CY, Rajanbabu V, Cheng CW, and Chen JY* (2010) Tilapia (Oreochromis
mossambicus) antimicrobial peptide, hepcidin 1-5, shows antitumor activity in cancer cells. Peptides.
(IF: 2.654; Rank: 39.2% in Pharmacy and Pharmacology)
46
Pan CY, Rajanbabu V, Chen JY, Her GM, and Nan FH* (2010) Evaluation of the epinecidin-1
peptide as an active ingredient in cleaning solutions against pathogens. Peptides 31(8):1449-58. (IF:
2.654; Rank: 39.2% in Pharmacology & Pharmacy)
47
Shu-Yi Yin, Wen-Hsin Wang, Bi-Xue Wang, Kandan Aravindaram, Pei-Ing Hwang, Han-Ming Wu,
and Ning-Sun Yang* (2010). Stimulatory effect of Echinacea purpurea extract on the trafficking
activity of mouse dendritic cells: revealed by genomic and proteomic analyses. BMC Genomics
11:612. (IF: 3.76; Rank: 30% in Biochemistry & Molecular Biology).
48
Varanavasiappan Shanmugam, Jing-Chi Lo, Chia-Lin Wu,Shan-Li Wang, Chong-Cheong Lai,
Erin L. Connolly,Jing-Ling Huang, and Kuo-Chen Yeh* (2010) Differential expression and
regulation of iron regulated metal transporters in Arabidopsis halleri and Arabidopsis thaliana– the
role in zinc tolerance. New Phytologist 8/173. (IF: 6.033; 4.6% in Plant Sciences)
49
Wai-Leng Lee, Tuan-Nan Wen, Jeng-Yuan Shiau, and Lie-Fen Shyur* (2010) Differential
Proteomic Profiling Identifies Novel Molecular Targets of Paclitaxel and Phytoagent
Deoxyelephantopin against Mammary Adenocarcinoma Cells. Journal of Proteome Research, 9,
237-253. (IF: 5.684; Rank: 9% in Biochemical Research Methods)
50
Antony S. Fatimababy, Ya-Ling Lin, Raju Usharani, Ramalingam Radjacommare, Hsing-Ting Wang,
Hwang-Long Tsai, Yenfen Lee, and Hongyong Fu* (2010) Cross-species divergence of the major
recognition pathways of ubiquitylated substrates for ubiquitin⁄26S proteasome-mediated proteolysis.
FEBS Journal 277: 796-816. (IF: 3.129; Rank: 43.36% in Biochemistry & Molecular Biology)
51
Hongyong Fu*, Ya-Ling Lin, and Antony S. Fatimababy (2010) Proteasomal recognition of
ubiquitylated substrates. Trends in Plant Science 15: 375-386. (IF: 10.095; Rank: 1.60% in Plant
Sciences)
52
Yen-Hsing Li, Mark Hung-Chih Chen, Hong-Yi Gong, Shao-Yang Hu, Ya-Wen Li, Gen-Hwa Lin,
Ching-Chun Lin, Wangta Liu, and Jen-Leih Wu* (2010) Progranulin A-mediated MET signaling is
essential for liver morphogenesis in zebrafish.J Biol Chem. (IF: 5.328; Rank: 17% in Biochemistry
and Molecular Biology)
53
Chung-Hsien Hung, Hong Jin Hwang, Yung-Han Chen, Yi-Fang Chiu, Shyue-Chu Ke, Robert L.
Burnap, and Hsiu-An Chu* (2010) Spectroscopic and functional characterizations of Synechocystsis
6803 mutant on and near the heme axial-ligand of cytochrome B559 in photosystem II. J. Biol.
Chem. 285, 5653-5663. (IF: 5.328; Rank: 25% in Biochemistry and Molecular Biology)
54
Yu-Hsin Hsieh, Fang-Hua Chu, Ya-Shin Wang, Shih-Chang Chien, Shang-Tzen Chang, Jei-Fu
Shaw, Chieh-Yin Chen, Wen-Wei Hsiao, Yueh-Hsiung Kuo*, and Sheng-Yang Wang* (2010)
Antrocamphin A, an anti-inflammatory principal from the fruiting body of Taiwanofungus
camphoratus, and its mechanisms. Journal of Agricultural and Food Chemistry. 58: 3153-3158. (IF:
2.469; Rank: 4.44% in Agriculture, Multidisciplinary)
55
Tzu-Yin Liu, Chiung-Yun Chang, and Tzyy-Jen Chiou* (2009) The long-distance signaling of
mineral macronutrients. Current Opinion in Plant Biology 12: 312-319. (IF: 8.688; Rank: 3.2% in
Plant Sciences)
56
Ho-Ming Chen and Shu-Hsing Wu* (2009) Mining small RNA sequencing data: a new approach
to identify small nucleolar RNAs in Arabidopsis. Nucleic Acids Research, 2009, 37 (9), e69. (IF:
6.878; Rank: 12% in Biochemistry and Molecular Biology)
57
Lay-Sun Ma, Jer-Sheng Lin, and Erh-Min Lai* (2009) An IcmF family protein, ImpL M , is an
integral inner membrane protein interacting with ImpK L , and its walker A motif is required for Type
VI secretion system-mediated Hcp secretion in Agrobacterium tumefaciens. J. Bacteriol, 191,
4316-4329. (IF: 3.64; Rank: 24% in Microbiology)
58
Nien-Chen Huang and Tien-Shin Yu*. (2009) The sequences of Arabidopsis GA-INSENSITIVE
RNA constitute the motifs that are necessary and sufficient for RNA long-distance trafficking in
Plant Journal 59: 921-929. (IF: 6.493; Rank: 4% in plant sciences)
59
Wei-Yi Lin, Shu-I Lin, and Tzyy-Jen Chiou* (2009) Molecular regulators of phosphate
homeostasis in plants, J. Exp. Bot., 60: 1427 - 1438. (IF: 4.001; Rank: 8% in Plant Sciences)
60 Li-Ching Hsieh, Shu-I Lin, Arthur Chun-Chieh Shih, June-Wei Chen, Wei-Yi Lin, Ching-Ying Tseng,
Wen-Hsiung Li, and Tzyy-Jen Chiou*. (2009) Uncovering small RNA-mediated responses to
phosphate-deficiency in Arabidopsis by deep sequencing. Plant Physiology, 10.1104/pp.109.147280.
(IF: 6.11; Rank: 5% in Plant Sciences)
61 Yi-Fang Chiu, Wen-Ching Lin, Chia-Ming Wu, Yung-Han Chen, Chung-Hsien Hung, Shyue-Chu
Ke, and Hsiu-An Chu* (2009) Identification and characterization of a cytochrome b559
Synechocystis 6803 mutant spontaneously generated from DCMU-inhibited photoheterotrophical
growth conditions. BBA-Bioenergetics 1787:1179-1188. (IF: 4.4; Rank: 30.7% in Biochemistry &
Molecular Biology)
62
Chiung-Swey Chang*, Yi-Hang Li, Li-Teh Chen, Wan-Chieh Chen, Wen-Ping Hsieh, Jieun Shin,
Wann-Neng Jane, Shu-Jen Chou, Giltsu Choi, Jer-Ming Hu, Shauna Somerville and Shu-Hsing
Wu* (2008) LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation.
Plant J. 54, 205-219. (IF: 6.493; Rank: 4% in Plant Sciences)
63
Thomas Ju Wei Yang, Paula Jay Perry, Silvano Ciani, Sundaravel Pandian, Wolfgang Schmidt*
(2008) Manganese deficiency alters the patterning and development of root hairs in Arabidopsis.
Journal of Experimental Botany Volume 59, Issue. 12 (IF: 5.364; Rank: 5.79% in Plant Science)
Pablo Bolaños-Villegas, Shin-Wen Chin, and Fure-Chyi Chen* (2008) Meiotic chromosome
behavior and capsule setting in Doritaenopsis hybrids. Journal of the American Society of
Horticultural Science 133:107–116. (IF: 1.009; Rank: 25% in Horticulture)
64
65
Thomas Ju Wei Yang, Paula Jay Perry, Silvano Ciani, Sundaravel Pandian, and Wolfgang
Schmidt* (2008) Manganese deficiency alters the patterning and development of root hairs in
Arabidopsis. Journal of Experimental Botany 59: 3453-3464. (IF: 4.001; Rank: 9.61% in plant
sciences)
66
Ho-Ming Chen *, Yi-Hang Li, and Shu-Hsing Wu* (2007) Bioinformatic prediction and
experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis.
Proc. Natl. Acad. Sci. USA 104, 3318-3323. (IF: 9.38; Rank: 7% in Multidisciplinary Sciences)
67
Mark Hung-Chih Chen1, Yen-Hsing Li1, Yvonne Chang, Shao-Yang Hu, Hong-Yi Gong, Gen-Hwa
Lin, Thomas T. Chen, and Jen-Leih Wu* (2007) Co-induction of hepatic IGF-I and progranulin
mRNA by growth hormone in tilapia, Oreochromis mossambiccus. General and Comparative
Endocrinology 150, 212-218.（1 co-first author）(IF:2.654; Rank: 55.91% in Endocrinology and
Metabolism)
II. Conference Abstracts (50 since 2006)
1
Mazen Alazem, Kuan-Yu Lin and Na-Sheng Lin* (2014) Abscisic acid regulates important
elements in the siRNA machinery against Bamboo mosaic virus. Recent Advances in Plant and
2
Microbial Biology (June 10 , Taipei, Taiwan)
Chiung-Yun Chang, Wen-Dar Lin and Shih-Long Tu* (2014) Genome-wide analysis of
heat-sensitive alternative splicing in Physcomitrella patens. 2014 Post-transcriptional Gene
3
Expression Regulation in Plants (June 30-July 2, Poznan, Poland) (Oral presentation)
Wen-Sui Lo, Tean-Hsu Chang, Chuan Ku, Ling-Ling Chen, and Chih-Horng Kuo* (2014)
Carbohydrate metabolism genes as virulence factors in mosquito spiroplasmas. 114th General
meeting of American Society for Microbiology (May 17-20, Boston, Massachusetts, USA) (IPMB
4
Young Scholars Travel Grant)
Jia-Ho Shiu, Jiun-Yan Ding, Ching-Hung Tseng, Shueh-Ping Lou, Takuma Mezaki, and Sen-Lin
Tang* (2014) Composition and distribution of coral associated Endozoicomonas communities differ
with locations, host species and seasonal shift. The 15th International Symposium on Microbial
Ecology (August 24-29, Seoul, Korea)
5
Jia-Ho Shiu, Jiun-Yan Ding, Ching-Hung Tseng, Shueh-Ping Lou, Takuma Mezaki, and Sen-Lin
Tang* (2014) The worldwide and long-stay coral associated bacteria, Endozoicomonas, and its
diversity, specificity and distribution. The 3rd Asia-Pacific Coral Reef Symposium (June 22-27,
Kenting, Taiwan)
6
Hsuan Tung (2014) People gap in Taiwan biotechnology industry development. Global Biotech
Revolution-Gap Summit 2014 (March 31- April 2, Cambridge, UK) (NSC Student Travel Grant)
Shan-Hua Yang, Tuan Meng Lee, Chang-Rung Huang, Ching-Hung Tseng, Pei-Wen Chiang,
Chung-Pin Chen, Hsing-Ju Chen, and Sen-Lin Tang (2014) Endolithic bacterial communities in the
coral Isopora palifera. The Symposium of Frontier of Microbial Ecology (September 4-5, Taipei,
7
8
9
10
Taiwan) (Best Poster Presentation Award)
Shan-Hua Yang, Tuan Meng Lee, Chang-Rung Huang, Ching-Hung Tseng, Pei-Wen Chiang,
Chung-Pin Chen, Hsing-Ju Chen, and Sen-Lin Tang (2014) Endolithic bacterial communities in the
coral Isopora palifera. The 15th International Symposium on Microbial Ecology (August 24-29,
Seoul, Korea) (TIGP Travel Grant)
Shan-Hua Yang, Tuan Meng Lee, Chang-Rung Huang, Ching-Hung Tseng, Pei-Wen Chiang,
Chung-Pin Chen, Hsing-Ju Chen, and Sen-Lin Tang (2014) Endolithic bacterial communities in the
coral Isopora palifera. The 3rd Asia-Pacific Coral Reef Symposium (June 22-27, Kenting, Taiwan)
Mazen Alazem and Na-Sheng Lin* (2013) Abscisic acid deficient 2 disjoints ABA pathway into
upstream part required for Bamboo mosaic virus accumulation and downstream part required for plant
resistance. 19th Australian Plant Pathology Conference (Novmber 25-28, Auckland, New Zealand)
(IPMB Young Scholars Travel Grant).
11 Mazen Alazem and Na-Sheng Lin* (2013) The abscisic acid pathway has multifaceted effects on
the accumulation of Bamboo mosaic virus. Advances in Molecular Plant-Microbe Interactions
(October 3-4, Taipei, Taiwan)
12 Mazen Alazem, Yu-Ling Huang, and Na-Sheng Lin* (2013) The roles of ABA genes in modulating
Bamboo mosaic virus-host interaction. 10th International Congress of Plant Pathology (August
25-30, Beijing, China)
13
Yu-Hsin Hsieh and Sheng-Yang Wang* (2013) Effects of lucidone on suppressing adipogenesis in
3T3-L1 cells and attenuating obesity and consequent metabolic disorders in high-fat diet C57BL/6
Mice. Prediabetes and the Metabolic Syndrome Congress (PDMS 2013) (April 18-20, 2013, Vienna,
Austria) (TIGP Student Conference Travel Grant)
14 Teng-Kuei Huang, Chia-Li Han, Shu-I Lin, Yu-Ju Chen, Yi-Chuan Tsai, June-Wei Chen, Wei-Yi Lin,
Pei-Mien Chen, Tzu-Yin Liu, Ying-Shin Chen, Tzyy-Jen Chiou* (2013) Quantitative membrane
proteomics revealing PHOSPHATE TRANSPORTER 1 as downstream component of PHO2 in
Arabidopsis roots. International Workshop on Plant Membrane Biology (March 26-31, Kurashiki,
Japan)
15
16
17
Chun-Ming Lai, Yueh Cho, and Hwei-Jan Hsu* (2013) Identification of somatic factors controlling
ovarian development by RNAi screening. 54th Annual Drosophila Research Conference (April 3-7,
Washington D.C., USA) (ICOB Poster Award Travel Grant)
Wei-Yi Lin, Teng-Kuei Huang, and Tzyy-Jen Chiou* (2013) NLA, a target of miR827, mediates
degradation of phosphate transporters to maintain phosphate homeostasis in Arabidopsis.
International Workshop of Plant Membrane Biology (March 26-31, Kurashiki, Japan)
Wen-Sui Lo, Chuan Ku, Ling-Ling Chen, Tean-Hsu Chang, and Chih-Horng Kuo* (2013)
Differentiations in metabolic capacities between mosquitoes-associated Spiroplasma diminutum and
S. taiwanense revealed by comparative genomic analyses. Annual Meeting of the Society for
Molecular Biology and Evolution (July 7-11, Chicago, Illinois, USA) (NSC Student Travel Grant)
18 Hsuan Tung and Yu-Chan Chao (2013) Baculovirus IE2 Forms Novel Visible Nuclear Cage-like
Structure as Strong Transcriptional center. 46th Annual Meeting of the Society for Invertebrate
Pathology. (Aug 11-15, 2013, Pittsburgh, USA) (NSC Student Travel Grant)
19 Pablo Bolaños-Villegas, Yang, X., Wang, H.J., Juan, C.T., Chuan, M.H., Makaroff, C., and Jauh,
G.Y. (2013) An Arabidopsis acetyltransferase is crucial for proper mitotic and meiotic cell division.
Proceedings of the 5th British Meiosis Meeting (March 27-28, 2013. Gonville and Caius College,
University of Cambridge, UK)
20
Bhaskara Govinal Badiger, Nguyen Thi Thao, and Paul E. Verslues* (2012) Unique drought
signaling roles of Highly ABA Inducible (HAI) protein Phosphatase 2Cs in Arabidopsis. Gordon
Research Conference on Salt and Water Stress in plants (June 24-29, Hong Kong China)
21 Chiung-Yun Chang, Wen-Dar Lin, and Shih-Long Tu* (2012) RNA-seq Analysis of Heat Shock
Response in Physcomitrella patens. 10th International Congress on Plant Molecular Biology.
(October 21-26, 2012. Jeju Island, Republic of Korea)
22
Wei-Jen Chang, Huei-Jyun Hu, Tsung-Han Lee, and Pung-Pung Hwang* (2012) Regulation of
Na+ absorption in freshwater teleost. Abs. p. 141. The 2012 Chinese Ichthyological Society (CIS),
(Sep. 16-17, 2012, Lanzhou, China ) (Best Presentation Award)
23
Wei-Jen Chang, Huei-Jyun Hu, Tsung-Han Lee, and Pung-Pung Hwang* (2012) Regulation of
Na+ absorption in zebrafish. Abs. p. 32. The 18th Japanese Medaka and Zebrafish Meeting (JMZM),
(Sep. 22-23, 2012, Kyoto, Japan) (JMZM Travel Grant)
24 Nien-Chen Huang, Jychian Chen and Tien-Shin Yu* (2012) Systemic floral inhibition by a florigen
paralog in arabidopsis. 23rd International Conference on Arabidopsis Research (3rd -7th July, Vienna,
Austria) (TIGP Conference Travel Grant)
25
Teng-Kuei Huang, Chia-Li Han, Shu-I Lin, Yu-Ju Chen, Yi-Chuan Tsai, June-Wei Chen, Wei-Yi Lin,
Pei-Mien Chen, Tzu-Yin Liu, Ying-Shin Chen, Tzyy-Jen Chiou* (2012) Identification of
Downstream Components of PHO2 by Quantitative Membrane Proteomics in Arabidopsis Roots.
10th International Congress on Plant Molecular Biology (Oct 21-26, Jeju, Korea) (ABRC Poster
26
Award Travel Grant)
Shang Jye Leong and Tzyy-Jen Chiou* (2012) Effect of Phosphite on Phosphate Starvation
Responses. 10th International Congress on Plant Molecular Biology (October 21-26, 2012, ICC,
Jeju Island, Republic of Korea)
27 Wei-Yi Lin, TengKuei Huang, and Tzyy-Jen Chiou* (2012) Regulation of Phosphate Transporters
by NLA, a Target of miR827, in Response to Phosphate Availability, 4th Pan American Plant
Membrane Biology Workshop (PAPMBW) (May 16-20, 2012, Asilomar, U.S.)
28 Munkhtsetseg Tsednee, Wei-Fu Chien and Kuo-Chen Yeh* (2012) Roles of different
phytosiderophores in response metal nutrition. 10th International Congress on Plant Molecular Biology
(October 21-26, 2012, Jeju, Republic of Korea)
29 Munkhtsetseg Tsednee, Yit-Wai Mak, Yet-Ran Chen and Kuo-Chen Yeh* (2012) Novel
phytosiderophores in barley. The 50th Anniversary Meeting of the Phytochemical Society of North
America (December 10-15, 2011, Hawaii’s Big Island, USA)
30 Pablo Bolaños-Villegas, Huei-Jing Wang, Chien-Ta Juan, Ming-Hsiang Chuan, and Guang-Yuh
Jauh* (2011) An Arabidopsis acetyltransferase is critical for cell cycle progression, DNA repair and
male meiosis. Proceedings of the 2011 Cold Spring Harbor Asia Conference on Plant Cell and
Developmental Biology, pp. 27 (May 31 - June 4, 2011, Suzhou, China)
31 Wei-Jen Chang, Yi-Fang Wang, Tsung-Han Lee, and Pung-Pung Hwang* (2011) The regulatory
redundancy of Na+ absorption in zebrafish (Danio rerio). Abs. P157, p. 216. 8th International
Congress of Comparative Physiology and Biochemistry (ICCPB), (May 31 – June 5, 2011, Nagoya,
Japan) (NSC Student Travel Grant)
32 Hsuan Tung, Catherine Yen-Yen Liu, Yu-Chan Chao* (2011). Investigation of baculovirus IE2
activation mechanism in mammalian cells for potential biomedical applications. Cold Spring Harbor
Laboratory Meeting on Mechanisms of Eukaryotic Transcription (Aug 31-Sep 4, New York USA)
33
34
Chiung Swey Chang., Julin. N. Maloof, Shu-Hsing Wu* (2010) LZF1/BBX22 optimizes
Arabidopsis skotomorphogenesis and growth fitness under short-day condition. Abs. PS04-17, pp.
77. International Conference on Plant Growth Substances (IPGSA) (June 28-July 2, 2010, Tarragona,
Spain) (TIGP Conference Travel Grant)
Lay-Sun Ma, Jer-Sheng Lin, Kai Westphal, Franz Narberhaus, and Erh-Min Lai*
(2010) Dissecting the Biochemical Function of an Inner Membrane ATPase and Its interacting
Partner in Agrobacterium Type VI Secretion System. 31st Annual Crown Gall Conference (Nov. 5-7,
University of California, Berkeley, USA). (Oral Presentation)
35 Wei-Yi Lin, Su-Fen Chiang, June-Wei Chen, Shu-I Lin, Tzyy-Jen Chiou* (2010) Characterization
of Arabidopsis microRNA827 and its target gene in response to Pi deprivation. International
Conference on Arabidopsis Research (June 6-10, 2010, Yokohama, Japan)
36
Yen-Hsing Li, Mark Hong-Chih Chen, Shao-Yang Hu, Ya-Wen Li, Gen-Hwa Lin, Wangta Liu and
Jen-Leih Wu* (2010) Progranulin, a novel regulator of MET, is required for embryonic hepatic
outgrowth in zebrafish. Eighteenth Symposium on Recent Advances in Cellular and Molecular
37
38
39
40
Biology. (Best Poster Award)
Shu-Yi Yin and Ning-Sun Yang* (2009). Ex Vitro Differentiation of Mouse Bone Marrow Cells
into Myeloid-Derived CD11b+Gr-1+ Cells. Stem Cell Society Singapore (November 1-3 2010,
Singapore) (Best Poster Award)
Wai-Leng Lee, Tuan-Nan Wen, Jeng-Yuan Shiau, and Lie-Fen Shyur* (2009) Comparative
Proteomics of Mammary Adenocarcinoma Cells Treated With Deoxyelephantopin and Paclitaxel.
EMBO Conference “Cancer Proteomics 2009: Mechanistic Insights, Technology Advances, and
Molecular Medicine” (June 8-11, 2009, Dublin, Ireland)
Yen-Hsing Li, Shao-Yang Hu, H.C. Chen, and Jen-Leih Wu* (2009) Progranulin regulates liver
developmental growth through met signaling pathway in zebrafish. The 23th Joint Annual
Conference of Biomedical Sciences. (Best Poster Award)
Thangasamy S, Guo C-L, Chen J, and Jauh G-Y(2009) LGD1, Lagging Growth and
Development1, is required for more tillering and early flowering in rice. The 6th International Rice
Genetics Symposium (November 16-19, 2009, Manila, Philippine).
41
Wei-Yi Lin, Shu-I Lin, Li-Chi Hsieh, June-Wei Chen, Wen-Hsiung Li, and Tzyy-Jen Chiou* (2009)
Autoregulation of PAP1/MYB75 via miR828 and TAS4-siRNA during phosphate deficiency,
Pb62013. Plant Biology meeting held by American Society of Plant Biologist
42
Erh-Min Lai, Jer-Sheng Lin, Lay-Sun Ma, Hung-Yi Wu, and Yin-Yuin Pang (2009) Study of a type
VI secretion system (T6SS) in Agrobacterium tumefaciens.. XIV Congress of the International
Society for Plant-Microbe interactions (July 19-23, 2009, Quebec, Canada)
43
Arun Kapoor, Bo-Jeng Wang, and Yung-Feng Liao* (2008) γ-Secretase–Mediated Proteolysis of
APP and Notch is Regulated by Caveolin-1. Alzheimer's Association International Conference
on Alzheimer's Disease (Chicago, Illinois, USA).
44
Ho-Ming Chen and Shu-Hsing Wu* (2008) Mining of RNA Degradome: Identification of Small
Nucleolar RNAs by analyzing of Arabidopsis small RNA sequencing data. The 2nd Taiwan-Japan
Young Researchers Conference on Computational and Systems Biology (TJY Conference Travel
45
46
47
Grant)
Ho-Ming Chen and Shu-Hsing Wu* (2008) Analysis of phased small RNAs reveals a trans-acting
siRNA cascade in Arabidopsis. American Society of Plant Biologists 2008 annual meeting
(June.26-Jul.1, 2008, Méridam, Mexico) (TIGP Conference Travel Grant)
Pablo Bolaños-Villegas, Yi-Chen Tsai, Kevin Long-Chi Wang and Wang-Shen Lo*(2008)
Characterization of the Aurora kinase family in Arabidopsis thaliana. Proceedings of the 2008
Symposium of the Society for Plant Molecular Biology of Taiwan, pp. 56. (August 7-8, 2008 National
Chiayi University, Taiwan)
Wai-Leng Lee, Tuan-Nan Wen, Jeng-Yuan Shiau, and Lie-Fen Shyur* (2008) Molecular responses
of mammary adenocarcinoma TS/A cells to phytocompound and chemotherapeutic drug:
comparative proteomics study. 4th International Symposium on Biocatalysis and Biotechnology
(November 19-21, 2008, Taipei) (Best Poster Award)
48 Wai-Leng Lee, Tuan-Nan Wen, Jeng-Yuan Shiau, and Lie-Fen Shyur* (2008) Comparative
proteome analysis of phytocompound and chemotherapeutic drug treated mammary adenocarcinoma
TS/A cells. 7th Meeting of the Consortium for Globalization of Chinese Medicine (2August 28-30,
2008, Taipei) (Best Poster Award)
49
Yen-Hsing Li, Shao-Yang Hu, H.C. Chen, Gen-Hwa Lin and Jen-Leih Wu* (2008) Progranulin
regulates liver growth through met signaling pathway in zebrafish. Fishery Society of Taiwan Annual
Meeting. (Best Poster Award)
50 Chiung-Swey Chang, Yi-Hang Li, Li-Teh Chen, Wan-Chieh Chen, Wann-Neng Jane and
Shu-Hsing Wu* (2006) LZF1, a HY5-regulated transcriptional factor, functions in light- regulated
anthocyanin accumulation and chloroplast development in Arabidopsis. Summer Camp of Plant
Molecular Biology (Best Poster Award) Institute of Plant and Molecular Biology (Oral
presentation Award) American Society of Plant Biologist annual meeting.