Jason M. Gallia 480 Riverside Drive • Johnson City, NY 13790 • [email protected] • (607) 761-5137 Education Expected May 2015 December 2009 December 2006 May 2003 Publications Professional Experience PhD Candidate, Computer Science Binghamton University, Binghamton, NY • Advisor: Prof. Patrick Madden • Dissertation focus: optimization of large scale NP-hard problems, with applications to biology and integrated circuit design. • ABD as of August 2011 MS, Computer Science Binghamton University, Binghamton, NY • Advisor: Prof. Patrick Madden • Thesis: Protein Identification By Dynamic Programming BS, Bioengineering. Binghamton University, Binghamton, NY Associates Degree, Engineering Science. Broome Community College, Binghamton, NY J. Gallia, K. Lavrich, A. Tan-Wilson, and P. H. Madden, “Filtering of MS/MS Data for Peptide Identification”, BMC Genomics, 2013, 14(suppl 7):S2 J. Gallia, K. Lavrich, R. McGough, A. Tan-Wilson, and P. H. Madden, “Filtering of MS/MS Data for Peptide Identification”, IEEE Computational Advances in Bio and Medical Sciences, 2012 Binghamton University, Binghamton, NY Lecturer Fall 2013 – Present Responsible for graduate and undergraduate courses focusing on the C and C++ programming languages and data structures. Binghamton University, Binghamton, NY Lecturer Summers 2010, 2011, January 2012 – Spring 2013 Responsible for undergraduate courses for engineering students, covering C programming, data structures, and an introduction to computer hardware. Binghamton University, Binghamton, NY Research Assistant August 2008 – present Collaborative work with Prof. Patrick H. Madden on optimization problems ranging from biology to integrated circuit design. Research Assistant August 2011 – present Collaborative work with Prof. Dmitry Ponomarev on parallel discrete event simulation using the WarpIV simulator. Binghamton University, Binghamton, NY Teaching Assistant August 2007 – May 2011 Binghamton University, Binghamton, NY Information Technology Specialist August 2004 – December 2011 Maintained and supported computing equipment the School of Nursing and the School of Education. Local Presentations, Lectures and Panels Stochastic Modeling Seminars presented in Binghamton Department of Mathematics, Summer 2012 • Presentation on stochastic methods used in computer science. • Survey presentation on genetic algorithms, simulated annealing, support vector machines. Computer Science Graduate Student Seminar Fall 11 - Spring 12 • Optimal solutions across layers of abstraction for integrated circuit design automation. • Protein identification methods (based on ICCABS 2012 publication). Parameter Estimation & Data Reduction for Cellular Biophysical Analysis NSFREU Program in Biosystems Modeling and Analysis, Columbia, Missouri, 2009 Internships Binghamton University, Binghamton, NY REU Fall 2006 Worked for Prof. Kenneth Chui at Binghamton University and the Molecular Structure Center at the University of Indiana, collecting X-Ray crystallography data, and constructing two-dimensional images from the data. University of Missouri, Columbia, MO REU Summer 2006 Worked for the cryogenics labs under the tutelage of Dr. John K. Critser and mentored by Dr. James Benson. Honours and Awards 2015 Graduate Student Excellence Award in Teaching Student Travel Grant - ICCABS Conference 2012 Upsilon Pi Epsilon - Computer Science Honour Society. Deans List - Spring 04 and Fall 06. Groups and Activities Computer Science Graduate Student Organization, Treasurer Spring 09 – Spring 13, President Fall 13 – Present Programming C, C++, Python, Mathematica, Linux shell scripting, PHP, Postscript, Qt, Haskell, R Mathematics Background Single Variable and Multivariate Statistics, Linear Models, Stochastic Models
© Copyright 2024