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SWATH™ Acquisition in the Cloud: OneOmics™ Project in BaseSpace®
U.S. HUPO 2015
March 15-18 • Tempe, AZ
– Christie Hunter, PhD and Brigitte Simons, PhD, SCIEX
Genomics + Proteomics Come Together in the Cloud
Be part of the next-generation
multi-omics computing revolution
Introducing the OneOmics Project
™
with the SCIEX SWATH™ Proteomics Cloud Toolkit
The benefits for proteomic
scientists are significant
BaseSpace
®
• Quickly and easily process and store
™
SWATH -generated mass spec-based
proteomics big data sets
reference libraries
user applications
genomics
proteomics
SCIEX
SWATH™
NEXT-GEN
PROTEOMICS
NEXT-GEN
SEQUENCING
SCIEX and Illumina® have partnered to create an environment where complex
multi-omics data integrates easier, executes faster and more securely, and
presents results immediately for worldwide collaboration.
With the OneOmics™ Project, highly-reproducible SWATH™ proteomics data
output from SCIEX TripleTOF™ systems is processed remotely in Illumina’s
BaseSpace® cloud computing environment. Results then integrate with
information from next-gen sequencing and user-developed applications
within BaseSpace® to provide unprecedented biological insights.
• Reduce onsite proteomics IT and related
maintenance costs by processing data
remotely on high-performance servers
• Share data securely and instantly, worldwide
• Present complex proteomics data in
graphical representations that are easily
understood by biologists for faster
interpretation and greater productivity
SWATH™ Proteomics Cloud Toolkit
The only cloud-based, app-enabled solution for integrated multi-omics analysis
Our toolkit comprises a suite of four applications
and a plug-in to upload proteomics data into BaseSpace®
DATA UPLOAD
The CloudConnect plug-in
for your PC enables the
uploading of SWATH™ data
to BaseSpace®
Protein Expression
EXTRACTOR
Processes SWATH™ data at
least 10X faster than typical
high-performance workstations –
so results are now available
in hours, not days
Protein Expression
ASSEMBLER
Executes protein
fold-change analysis
and groups samples,
according to biological
experiments to determine
fold change of protein
expression
Protein Expression
BROWSER
Provides a comprehensive set of
visualization tools to present results
in biological context, including
graphical heat maps, starburst blots,
box/whiskers and gene ontology
Protein Expression
ANALYTICS
Offers a complete set of analytics
that enable data quality analysis
Learn more
Take the next step
about the OneOmics Project
Try OneOmics FREE today
POSTER PRESENTATION AT U.S. HUPO
Getting started is easy
Integrating Proteomics and Genomics
Data in a Cloud Environment
To see a video demo, visit:
www.sciex.com/OneOmics
™
Christie Hunter, PhD, Brigitte Simons, PhD,
Randy Arnold, PhD, SCIEX
"
The integration of proteomic and genomic data analysis
through a partnership with SCIEX and Illumina® is an
exciting collaboration that will bring democratization of
computational efforts, general access and standardization
"
of data analysis, and provide a platform for systems
biology in life science.
Leroy Hood, M.D., PhD
President of Institute for Systems Biology
AB SCIEX is doing business as SCIEX.
© 2015 AB Sciex. For Research Use Only. Not for use in diagnostic procedures.
The trademarks mentioned herein are the property of AB Sciex Pte. Ltd. or their
respective owners. AB SCIEX™ is being used under license.
RUO- MKT-07- 2065 - A 2/2015
™
To learn more about the SWATH™ Proteomics Cloud
Toolkit applications and cloud computing environment –
and to test with preloaded sample data – visit:
https://basespace.illumina.com