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Poster List Odd Posters: Poster Session I ‐ Sunday March 29th from 1:00 ‐ 2:00pm
Even Posters: Poster Session II ‐ Monday March 30th from 1:00 ‐ 2:00pm
Poster #
Title
Category
100
Spatial symmetry breaking determines spiral wave chirality
Light Microscopy
101
Identification of rare and novel alleles in FFPE tumor samples using laser capture microdissection (LCM)
and Ampliseqâ„¢ sequencing technologies
Light Microscopy
111
Role of Activin In Regulating Alpha-to-Beta Cell Transdifferentiation
Flow Cytometry
112
Automation of Single Cell Plating Utilizing Microfluidic Dispensing Technology
Flow Cytometry
115
DNA nanostructures for the characterization of bispecific antibodies with electro-switchable biosurfaces
Antibody Technology
116
Validating antibodies for ChIP-Seq - Validating the validation kit
Antibody Technology
117
Impact of mitosis inhibitors on neural stem cell division during mammalian corticogenesis
Antibody Technology
119
Monospecific affinity purified peptide antibody production
Antibody Technology
120
Efficient Workflow for Recombinant Bacterial Protein Production and Characterization
Recombinant Proteins
Polymerase/DNA interactions and enzymatic activity: multi-parameter analysis with electro-switchable
biosurfaces
Blending art and science to understand genotype and phenotype with public data and Molecule World on
the iPad
A Novel High Resolution Metabolite MS/MS Spectral Library for Accurate Metabolite Identification in
Human Biofluids
Macromolecular
Interactions
Macromolecular
Interactions
126
Genomic profiling in single cells using high throughput quantitative PCR and mRNA-Seq
Microfluidics
128
In-depth identification of protein images by combining high mass resolution MALDI FTICR Imaging and
high performance qTOF nLC-MS/MS
Biomarkers
130
Exploring the potential of a last generation UHR-Q-TOF for rapid generation of accurate information on
proteoforms mass, distribution and relative abundancy.
Protein Analysis
121
122
124
131
132
Rapid Analysis of Protein and Antibody Aggregation and Fragmentation using Nanoelectrospray Ion
Mobility Spectrometry
Purification and Partial Characterization of Snake Leaf-Nosed Viper (Eristicophis macmahonii )
Hemoglobin
Metabolomics
Protein Analysis
Protein Analysis
135
Combining top-down and bottom up quantitative proteomics reveals cathepsin-B activity is required for
efficient plant virus transmission by aphids.
Proteomics
136
Characterization of an Improved Ultra-High Resolution Quadrupole Time of Flight (UHR-TOF) Instrument
for Proteomics Applications
Proteomics
137
Proteomic analysis of a multidrug resistant strain of Acinetobacter baumannii
Proteomics
139
The ELF Preparative Electrophoresis System for Size-based Proteome Fractionation
Proteomics
140
Unexpected trypsin cleavage at ubiquitinated Lysine
Proteomics
141
Solid-Phase Derivatization: a Versatile Toolbox for Chemical Proteomics
Proteomics
145
N-Terminal Amino Acid Sequence Determination of Proteins by N-Terminal Dimethyl Labeling; Pitfalls and
Advantages When Compared with Edman Degradation Sequence Analysis.
Protein Sequencing
Techniques
150
Multiplexed LC-MRM-MS Analysis of Cardiovascular Disease Biomarkers Using Novel Integrated
Microfluidics
Quantitative Proteomics
151
Phosphoproteomic Analysis of Severe Congenital Neutropenia
Quantitative Proteomics
153
A Multi-Centric Study To Evaluate the Use of Relative Retention Times in Targeted Proteomics
Quantitative Proteomics
155
Capillary nano-immunoassay to fingerprint signaling molecule responses to drug treatment
Quantitative Proteomics
159
Evaluating an Isotopically Labeled IgG for the Relative and Absolute Quantitation of N-linked Glycans
Carbohydrate Analysis
166
Statistical analysis of multiple iTRAQ/TMT experiments labeled with variable reporter ion tags using
ProteoIQ
Bioinformatics
167
Genome Data Aggregation and Exchange across Distributed Genomic Data Repositories
Bioinformatics
168
Analysis of Labeled and Non-Labeled DIA and DDA Proteomic Data using Progenesis QI for Proteomics
Bioinformatics
169
RNA-Seq Analysis of Phosphate-Stressed C. reinhardtii Cells
Data processing workflow for direct quatitative analysis of native human peptides in complex secretome
samples
Evaluation of normalization methods for miRNA sequencing data generated with quantitative nuclease
protection assay
Bioinformatics
172
The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences
Bioinformatics
173
A practical evaluation of bioinformatics software for production environments
Bioinformatics
174
The Nimble Corea: facilitating the delivery of efficient bioinformatic services
Bioinformatics
170
171
Bioinformatics
Bioinformatics
175
An Intuitive 16S rRNA Biodiversity Tool
Bioinformatics
176
Merging Data for Correlation And Network-based Analysis using GeneSpring 13
Bioinformatics
177
ngApps - the integrative R framework for dynamic and high-throughput bioinformatics in core labs
Bioinformatics
180
Evaluation and Purchase of an Analytical Flow Cytometer: Some of the Numerous Factors to Consider
Core Facilities
181
Change in Focus of a Core Facility Operation
DNA Footprint Analysis by Automated Capillary Electrophoresis (DFACE) at the Plant-Microbe Genomics
Facility
Core Facilities
183
Professional Development in the Context of Core Facility Management
Core Facilities
184
Design and Implementation of a Theoretical and Practical Flow Cytometry Course to Graduate Students
at The University of Vermont
Core Facilities
185
Utilizing Digital PCR for Copy Number Detection in a Core Facility
Core Facilities
186
Using antibody arrays as an alternative to large scale proteomics: a targeted approach
Core Facilities
187
ABRF India Chapter: Networking Lifescience core facilities in India region
Core Facilities
188
Developing and implementing nano-immunoassays to advance quantitative proteomic analysis, biomarker
assessment and molecular diagnostics
Core Facilities
189
Integrating Genome Engineering as a Core Facility Service
Core Facilities
190
Lehigh Health Research Hub, the One-of-a-kind Combination of Shared Resources for Life Sciences
Core Facilities
191
The Complete Genome Sequence and Identification of Two Larval Shellfish Pathogens
Core Facilities
196
Cost-Effective And Rapid Genotyping By Sequencing (GBS) Using Ion AmpliSeqTM Technology
Genotyping
200
A Targeted Next Generation Pharmacogenomics Genotyping Panel
Genetic Variation
201
Detection of Rare Nucleic Acid Targets using a Microplate-Based Microfluidic Digital PCR (dPCR) System
PCR Methodology
202
Aneuploidy Detection in S. cerevisiae by Multiplex Droplet Digital PCR
PCR Methodology
203
Evaluation of incorporation efficiency of fluorescently labeled nucleotide triphosphates by MALDI MS
PCR Methodology
205
Activation of Inflammatory Cytokines in Gab2 and Gab3 Deficient Bone Marrow Derived Macrophage
Cells
PCR Methodology
210
DNA shipping and preservation under extreme temperature conditions
Nucleic Acid
Extraction/Amplification
211
Directed Evolution for the Development of an Inhibitor-Resistant DNA Polymerase for Improved Target
Amplification and Quantification of Crude Samples with Real-Time PCR
Nucleic Acid
Extraction/Amplification
212
Simultaneous extraction and purification of NGS-Grade DNA and RNA from FFPE tissue samples with
Covaris truXTRAC
Nucleic Acid
Extraction/Amplification
213
Clinical performance of exome capture technology: impact of kits, coverage and analysis.
DNA Sequencing
214
Improved Method for Reduced Representation Bisulfite Sequencing (RRBS)
DNA Sequencing
182
Core Facilities
215
217
218
219
Whole Exome Sequencing of Cell-Free DNA from Plasma
DNA Sequencing
Discovery of novel markers for neural differentiation with Next-Generation Sequencing
DNA Sequencing
Whole Genome Sequencing of the TALLYHO/Jng Mouse and Identification of Obesity Susceptibility
Variants
Streamlining NGS workflows using by the application of the DNA Integrity Number (DIN) from the
Genomic DNA ScreenTape Assay
DNA Sequencing
DNA Sequencing
220
An effective and reliable enzymatic ribosomal RNA (rRNA) depletion method for preparation of highquality libraries for transcriptome sequencing
DNA Sequencing
221
Improved Detection of Low Level Sequence Variants by Sanger Sequencing using a New Variant Caller
Software
DNA Sequencing
223
Sanger Sequencing of Low Amount of Genomic DNA and FFPE DNA with PCR Primers Derived from the
Ion AmpliSeq Cancer Hotspot Panel
DNA Sequencing
224
Sequencing of bacterial RNA on PacBio using modified iso-seq library construction protocol
DNA Sequencing
225
227
Increasing Sensitivity of Next Generation Sequencing-based Transcriptome Profiling by Selectively
Depleting Abundant RNAs
Significantly improved de novo assembly of small genomes using the Ion TrueMate Plus Library Kit on the
Ion PGM System
DNA Sequencing
DNA Sequencing
228
Repair of challenging FFPE DNA improves library success rate and sequencing quality
DNA Sequencing
229
A novel streamlined NGS library preparation workflow using enzymatic fragmentation results in extremely
high yields and low sequencing bias
DNA Sequencing
234
A complete solution for CTC and cfDNA analysis on the Ion Torrent Platform
DNA Sequencing
235
Optimizing size selection to ensure accurate insert sizes for Next Generation Sequencing
DNA Sequencing
236
Selective RNA depletion to evaluate efficiency of InDA-C technology for non-traditional organisms
DNA Sequencing
237
Evaluation of Automated ChIP-Seq Library Construction Protocols with Selection Modifications
DNA Sequencing
238
One-Step Library Preparation for Amplicon-Based 16S Metagenomic DNA Sequencing and a Method for
Preparing Metagenomic Samples for Direct Nanopore Sequencing
DNA Sequencing
239
Comparing the SNP Calling Capabilities of Illuminas NextSeq 500 and HiSeq 2500
DNA Sequencing
240
A Complete Solution for Generating Stranded RNA-Seq Libraries from High-Input Total RNA
DNA Sequencing
245
Harnessing Template Switching Technology for Preparation of Low-Input Ligation-Free Sequencing
Libraries
Molecular Indexing for Improved RNA-Seq
DNA Sequencing
247
Amplicon based 16S ribosomal RNA Sequencing and Genus Identification
DNA Sequencing
248
Reducing Bias in Small RNA-Sequencing
DNA Sequencing
249
KAPA Hyper Prep Kit and KAPA HiFi Uracil+ Allow for Reduced Representation Bisulfite Sequencing of
Ultra-low Amounts of DNA in B Cells
DNA Sequencing
250
Highway to Heaven: sequencing the genome of the waterfall climbing Hawaiian goby (Sicyopterus
stimpsoni)
DNA Sequencing
251
Reduce Next Generation Sequencing Costs with Preparation of Higher Complexity Libraries
DNA Sequencing
252
Increasing Library Yields for DNA Methylation Sequencing from Limiting Samples
DNA Sequencing
253
Detection of Somatic Mutations in Circulating Cell-Free DNA and FFPE Samples
DNA Sequencing
254
Lower Cost, High Throughput Transcriptome Library Preparation with the Labcyte Echo Liquid Handler
and the NuGEN Ovation Single Cell RNA-Seq System
DNA Sequencing
255
Miniaturized Reactions for Lower Cost Sanger Sequencing using the Labcyte Echo Liquid Handler
DNA Sequencing
257
Comparative Analysis of Methods to Detect Copy Number Variations Using Single Cell Sequencing
Technique
Computational Biology
260
Results of the Protein Sequencing Research Group (PSRG) 2015 Study: N-terminal identification of a
standard protein at low picomole levels by dimethyl labeling and bottom-up mass spectrometry
ABRF Research Group
261
RNA spike-in controls and analysis methods for trustworthy genome-scale measurements
ABRF Research Group
241
DNA Sequencing
262
3D Standard for the Evaluation of Confocal Microscopes
ABRF Research Group
263
Evaluating the Effects of Cell Sorting on Gene Expression
ABRF Research Group
264
Antibody Research Group
ABRF Research Group
266
The ABRF Metagenomics Research Group (MGRG): Developing Microbial Reference Standards for
Metagenomics Applications and the Extreme Microbiome Project (XMP)
ABRF Research Group
267
Identification of low abundance proteins in a highly complex protein sample
ABRF Research Group
268
An automated approach for performance benchmarking of fluorescence microscopes
ABRF Research Group
269
The ABRF Next-Generation Sequencing Study: Multi-platform Assessment of Transcriptome Profiling
using RNA-seq Standards and of DNA Sequencing using Genomic Standards
ABRF Research Group
270
Genomics Research Group Session
ABRF Research Group
271
ABRF sPRG 2015 Study Update: Further development and Characterization of a Proteomics
Normalization Standard Consisting of 1,000 Stable Isotope Labeled Peptides
ABRF Research Group
272
iPRG 2015 Study: Differential Abundance Analysis in Label-Free Quantitative Proteomics
ABRF Research Group
273
274
Updated Results from the Inter-Laboratory Comparisons of DNA/RNA Quality Assessment Study ABRF Research Group
The influence of DNA fragment size on ChIP-Seq results from low amounts of DNA
ABRF Research Group