doi:10.1111/j.1440-1746.2010.06447.x REVIEW Epigenetic regulation of signaling pathways in cancer: Role of the histone methyltransferase EZH2 jgh_6447 19..27 Daisy PF Tsang and Alfred SL Cheng Institute of Digestive Disease and Department of Medicine and Therapeutics, the Chinese University of Hong Kong, China Key words cancer, epigenetic silencing, EZH2, histone modifications, signaling pathways. Accepted for publication 14 July 2010. Correspondence Professor Alfred S.L. Cheng, Institute of Digestive Disease, the Chinese University of Hong Kong, Shatin, NT, Hong Kong. Email: [email protected] There is no potential conflict of interest for each of the authors. Abstract EZH2 is the histone H3 lysine 27 methyltransferase of polycomb-repressive complex 2. It transcriptionally silences cohorts of developmental regulators in stem/progenitors and cancer cells. EZH2 is essential in maintaining stem cell identity by globally repressing differentiation programs. Analogously, it plays a key role in oncogenesis by targeting signaling molecules that control cell differentiation. Emerging data indicate that EZH2 promotes cancer formation and progression through epigenetic activation of oncogenic signaling cascades and inhibition of pro-differentiation pathways. Genome-wide mapping analysis has been expanding the repertoire of target genes and the associated signaling pathways regulated by EZH2. Better understanding of the molecular basis of such regulations in various cancer types will help establish EZH2-mediated epigenetic silencing as a therapeutic target. Introduction Oncogenesis is a complex process associated with accumulation of genetic and epigenetic defects that alter the transcriptional program. High throughput ‘omics’ analysis of gene expression in cancer patient cohorts has led to the identification of key genes and signaling pathways that drive cancer progression.1 However, relatively little is known about the mechanisms that underlie deregulation of signaling pathways in cancers. A detailed understanding of the regulation of the signal transduction pathways should shed light on the development of novel targeted therapy. Epigenetic aberrations are now established in tumor initiation, promotion, and progression.2–4 The most well-characterized alteration is CpG DNA hypermethylation. This is driven by DNA methyltransferase (DNMT)s. Methylation often accumulates in promoter regions of tumor suppressor genes, thereby contributing to loss of tumor suppressor pathways in most if not all human cancers.5,6 In addition to DNA methylation, there is accumulating evidence that histone modifications and their associated chromatinmodifying enzymes play causal roles in cancer development.2,6,7 Common histone modifications leading to gene silencing in cancer include histone H3 lysine 9 methylation, deacetylation, and histone H3 lysine 27 trimethylation (H3K27me3). These all contribute to the inaccessibility of the promoter elements to transcription factor binding.8,9 In this review we focus on one of the histone methyltransferases (HMTs), called enhancer of zeste homolog (EZH2), which is the catalytic subunit of Polycomb-repressive complex (PRC)2 that methylates H3K27me3.10–12 Here we describe the polycomb-mediated silencing processes and review the molecular mechanisms of EZH2 functions in cancer cells, especially recent findings that depict the signaling pathways altered by EZH2 that drive oncogenesis. Clinical implications will also be mentioned. Polycomb-mediated epigenetic silencing Gene silencing by polycomb-mediated H3K27me3 Polycomb group (PcG) proteins promote gene repression through epigenetic modification of histones.13,14 PcGs are highly conserved, from Drosophila to human, and form distinct multimeric complexes. Among the four core components of PRC2 (EZH2, SUZ12, EED, and NURF55),15–18 EZH2 via the SET-domain catalyzes H3K27me3 necessary for PRC2-mediated gene repression.19,20 H3K27me3 then serves as the binding site of chromodomain of PRC1, which contains BMI1, RING1, HPH, and HPC subunits, to form heterochromatin structure.14,20,21 It is believed that the binding of PRC1 prevents recruitment of transcriptional activation factors, thereby blocking initiation of transcription by RNA polymerase II.11,14,20,21 Thus, PRC1 and 2 cooperate to ‘initiate’ and ‘maintain’ the chromatin organization for gene repression. Polycomb-mediated H3K27me3 had previously been recognized in the transcriptional silencing of differentiation genes, e.g. Hox transcription factors, and in the early steps of mammalian X-chromosome inactivation.11,21 New polycomb proteins and their functions have recently been discovered. For example, PHD finger protein 1 in human or polycomblike in Drosophila has been found to interact with EZH2 to stimulate PRC2 activity and generate high levels of H3K27me3 in target genes.22 Through genome-wide studies, transcription factors and signaling components with key Journal of Gastroenterology and Hepatology 26 (2011) 19–27 © 2010 Journal of Gastroenterology and Hepatology Foundation and Blackwell Publishing Asia Pty Ltd 19 EZH2-regulated signaling pathways DPF Tsang and ASL Cheng roles in cell fate decisions are now identified to be PRC2 targets in a wide variety of organisms (see below). Interestingly, phosphorylation of EZH2 protein on serine 21 by activation of AKT signaling pathway can inhibit EZH2-mediated H3K27me3 and hence release gene silencing.23 On the other hand, UTX and JMJD3 have recently been discovered as H3K27 demethyltransferases via the JmjC-domain.24 Thus, H3K27me3 is a reversible marker; it can be dynamically regulated by site-specific histone methyltransferases and demethylases. Interaction between EZH2, DNMTs and HDACs in gene silencing Because Drosophila and Caenorhabditis elegans deploy H3K27me3 but little or no DNA methylation in gene silencing, H3K27me3 and DNA hypermethylation have been considered as independent epigenetic systems. However, since the landmark discovery that deciphered the physical and functional interaction between human PRC2 subunits and DNMTs in silencing certain target genes,25 new models have been evolved to illustrate the H3K27-CpG methylation link in normal and cancer development; informative data have been based on chromatin immunoprecipitation (ChIP)-based analysis and bioinformatics database mining.26–28 The results of these studies indicate that genes acquiring H3K27me3 by EZH2-containing PRC2 in stem cells during normal development are predisposed for de novo DNA hypermethylation and conversion to long-term silencing in the presence of oncogenic cues, such as inflammation.4,29 In other words, EZH2 pre-ordains certain genes to later become CpG hypermethylated during cellular transformation.26–28 More recently, using genome-wide location analysis and various DNA methylation analyses, we and others have established PRC2-mediated H3K27me3 as an epigenetic mark pathogenically involved in cancer through silencing of tumorsuppressor genes.30–34 This process is mechanistically independent of DNA methylation because: (i) H3K27me3 targets generally show no or low DNA methylation in their promoters, and (ii) EZH2 inhibition reactivates hundreds of genes silenced by H3K27me3 without affecting their DNA methylation levels.31,32 Thus, while both H3K27me3 and DNA hypermethylation can be linked for transcriptional repression, not all genes suppressed by polycomb-mediated methylation are necessarily maintained by promoter DNA methylation. The reason why DNA methylation in cancer affects some silenced H3K27me3 targets but not others is not known. One possibility is that it might be related to tissue- and cancer-specific differences in the HMT/DMNT machinery activation.21,31 Physical and functional links between EZH2 and histone deacetylase (HDAC) are, however, well-established.35,36 PRC2 can physically associate with HDAC1 and HDAC2, which in turn can deacetylase H3K27, H3K9, H3K14 or H4K811. PRC2-mediated repression of gene activity involves histone deacetylation. HDAC inhibitors like trichostatin A reactivate genes silenced by H3K27me3 in cancer cells, and this effect is synergistically enhanced with EZH2 inhibition.31,37 Collectively, these studies illustrate the interplay between EZH2, DNMTs, and HDACs epigenetic silencing pathways that contribute to aberrant gene expression in cancer cells. 20 Altered expression and functions of EZH2 in cancers EZH2 overabundance correlates with tumor aggressiveness and poor prognosis EZH2 is generally not expressed in adult tissues. However, it is overexpressed in a broad range of hematopoietic and solid human malignancies (Table 1), where its overabundance is often associated with poor prognosis.30,41,42,48,50,57 Through gene expression profiling, overexpression of EZH2 was first reported in hormonerefractory, metastatic prostate cancer.37 In this cancer, high EZH2 concentration is strongly correlated with tumor progression and greater risk of recurrence after prostatectomy.37,58 A ‘Polycomb repression signature’ composed of 14 direct H3K27me3 targets, derived from a specific cohort of genes transcriptionally repressed by EZH2 in metastatic prostate cancer,37 has been shown to predict poor clinical outcome.57 In breast cancer, abnormally high levels of EZH2 are likewise associated with tumor aggressiveness, increased risk of metastasis and shorter patient survival.41,42,50 Subsequent studies have also described the prognostic value of EZH2 in cutaneous melanoma, Hodgkin’s lymphoma and cancers of the bladder, colon, endometrium, and liver.44,46,48,50,51 Increased cell proliferation is commonly associated with EZH2 overexpression in cancers. Conversely, loss of EZH2 inhibits growth of cancer cells.16,37,59,60 Concordantly, breast and colon cancer patients with EZH2-positive tumors have much higher proliferative index (up to 15-fold) than that with EZH2-negative Table 1 EZH2 overexpression and functions in human cancers. The order of EZH2-overexpressing cancer types are listed according to their time of discovery Type of cancer Functions References Prostate cancer Cellular transformation Proliferation Invasion and metastasis Cellular transformation Proliferation Invasion and metastasis Proliferation Proliferation Anti-differentiation Cellular transformation Proliferation Proliferation Proliferation Proliferation Invasion and metastasis Proliferation Proliferation Anti-differentiation Proliferation Anti-apoptosis Proliferation Invasion and metastasis Proliferation Invasion and metastasis 38–40 Breast carcinoma Lymphomas Myeloma Bladder carcinoma Colon cancer Cutaneous melanoma Hepatocellular carcinoma Endometrial cancer Lung cancer Pancreatic cancer Gastric cancer Ewing’s sarcoma 41–43 44 45 46,47 48,49 50 51 50 52 53 54 55,56 Journal of Gastroenterology and Hepatology 26 (2011) 19–27 © 2010 Journal of Gastroenterology and Hepatology Foundation and Blackwell Publishing Asia Pty Ltd DPF Tsang and ASL Cheng tumors.42,48 Moreover, in accordance with the coordinated action of PRCs in gene silencing, co-expression of EZH2 and BMI-1 is observed in B-cell non-Hodgkin lymphomas, lung and hepatocellular carcinoma,44,52,60 and correlated with histological severity.52,60 Taken together, these studies demonstrate the significant association of high EZH2 levels with aggressive forms of cancer and emphasize EZH2 as a prognostic indicator of outcome in cancer patients. Functions of EZH2 in carcinogenesis Many phenotypic characteristics are shared between stem cells and tumor cells, such as high differentiation capacity and proliferation rates. These observations have given rise to the notion that undifferentiated stem/progenitors or dedifferentiated precursor cells may play a key role in carcinogenesis. Likewise, the role of EZH2 in inhibiting differentiation and maintaining pluripotency in embryonic stem (ES) cells61–63 suggests similar roles in oncogenesis.11,64,65 PRC2 subunits and the associated H3K27me3 have been shown to occupy a large cohort of developmental regulators to repress the differentiation program in ES cells.61,63 Intriguingly, these genes are also co-occupied and silenced by Oct-4, Sox-2, and Nanog, transcription factors that are essential in sustaining pluripotency and self-renewal of ES cells.61,63 Remarkably, ES cells and poorly-differentiated human tumors are found to share gene expression signatures defined in part by PRC2- and Oct-4/Sox-2/ Nanog-target genes.66 The anti-differentiation property of EZH2 is also manifested in various cancer types (Table 1). In Ewing tumor, EZH2 is directly induced by a fusion protein EWS-FLI-1, which plays a key role in tumor pathogenesis.55,56 Knockdown of EZH2 suppresses development of Ewing tumors in association with upregulation of genes involved in neuroectodermal/endothelial differentiation. These findings seem to indicate a key role for EZH2 in maintaining an undifferentiated phenotype in Ewing tumor.56 On the other hand, EZH2 is crucial in regulating cell cycle via the retinoblastoma pathway.11,12,67,68 Knockdown of EZH2 deregulates genes involved in G2/M transition in a way that inhibits cell proliferation by inducing G2/M arrest.43,67 The findings indicate that EZH2 overexpression results in decreased BRCA1 with high levels of Cdc2CyclinB1 complex, which drives mitosis and uncontrolled proliferation.43 EZH2-containing PRC2 also transcriptionally represses cell cycle suppressor p16 via H3K27me3.68,69 This in vitro finding is consistent with the statistical inverse correlation detected between EZH2 and p16 expression in cutaneous melanoma and endometrial carcinomas.50 Collectively, these findings are consistent with the proposal that EZH2 promotes tumor growth by inhibiting tumor differentiation and enhancing cell cycle progression. In addition, increased EZH2 expression promotes neoplastic transformation of immortalized epithelial cells.39–41,56 In line with the strong correlation between EZH2 expression and aggressive tumor subgroups, EZH2 can increase the invasiveness and metastatic potential of cancer cells.39,41,46,56 Furthermore, EZH2 has been recently shown to directly regulate apoptosis in cancer cells.70 EZH2 antagonizes the pro-apoptotic activity of E2F1 by epigenetic repression of Bim expression, thus permitting cancer cells with aberrant E2F1 activity to evade apoptosis.70 Based on its aberrant expression in tumor tissues and various EZH2-regulated signaling pathways pro-tumorigenic properties, EZH2 can now be considered as a bona fide oncogene. EZH2-mediated deregulation of signaling pathways Global scanning of PRC1 and PRC2 chromatin binding sites in Drosophila has uncovered many transcriptional regulators and key components of signal transduction pathways, including Wingless, Hedgehog, Notch and Delta.71 Genome-wide searches of PRC2 target genes in mammalian cells including fibroblasts, ES and cancer cells also revealed cohorts of signaling components that control cell differentiation.19,61,63,72,73 Emerging data indicate that EZH2 has a master regulatory function in controlling key signaling pathways in cancers by transcriptional repression of signaling molecules. Wnt/b-catenin signaling The canonical Wnt signaling pathway, which regulates the ability of the b-catenin protein to drive activation of specific target genes, is aberrantly activated in the development of various human cancers. Gain-of-function mutations of the CTNNB1 gene (encoding b-catenin) and loss-of-function mutations of adenomatous polyposis coli and AXIN genes have been suggested to be the preferred routes to chronic Wnt signaling dysfunction in cancers.74,75 However, the occurrence of these mutations is much less prevalent than the abnormal accumulation of b-catenin observed in tumor tissues, e.g. HCC76. Recent studies indicate that histone modifications might control key epigenetic regulators of the Wnt/ b-catenin signaling pathway in cancers. Jiang et al. have recently found that transcriptional repression of DACT3, a Wnt antagonist interacting with Dishevelled, leads to constitutive activation of Wnt/b-catenin signaling in colorectal cancer.77 Unlike some Wnt signaling inhibitors that are silenced by DNA methylation, e.g. SFRP genes,78 DACT3 repression in cancer cells is associated with bivalent H3K27me3 and H3K4me3 chromatin modifications.77 This finding supports our previous observation that not all genes suppressed by polycombmediated methylation are necessarily maintained by promoter DNA methylation.31 Pharmacological inhibition of histone methylation and deacetylation robustly induces DACT3 expression. This inhibits Wnt/b-catenin signaling and causes dramatic apoptosis of colon cancer cells.77 While the epigenetic regulator driving DACT3 repression in colon cancer has not been defined, we have recently used chromatin immunoprecipitation microarray (ChIP-Chip) analysis to uncover a panel of Wnt/b-catenin signal antagonists whose promoters were concordantly occupied by EZH2 and H3K27me3 in HCC cells (Cheng et al., manuscript submitted). Further analyses illustrated that EZH2-mediated transcriptional repression of these Wnt pathway inhibitors allows constitutive Wnt/b-catenin signaling, which likely plays a critical role in EZH2-stimulated cellular proliferation (Cheng et al., manuscript submitted). Collectively, these studies provide mechanistic and functional links between EZH2-mediated H3K27me3 and Wnt/b-catenin signaling in the development of colorectal and liver cancers. EZH2 and b-catenin co-expression may cause uncontrolled growth, placing large numbers of cells susceptible to secondary Journal of Gastroenterology and Hepatology 26 (2011) 19–27 © 2010 Journal of Gastroenterology and Hepatology Foundation and Blackwell Publishing Asia Pty Ltd 21 EZH2-regulated signaling pathways DPF Tsang and ASL Cheng events of neoplastic transformation. This notion is further supported by a recent transgenic study demonstrating that targeted overexpression of EZH2 in the mammary gland induces b-catenin nuclear accumulation and causes epithelial hyperplasia.79 In addition to the canonical Wnt pathway, a direct engagement of EZH2 in noncanonical Wnt signaling has been recently elucidated.80 In this study, cigarette smoke was shown to activate polycomb machinery to repress a Wnt signaling antagonist DKK-1 in lung cancer cells.80 Specifically, exposure of tobacco smoke condensate induced recruitment of EZH2, Suz12 and Bmi-1 to the DKK-1 promoter, and caused remodeling of histone marks (increased H3K27me3 and decreased H4K16Ac) in the absence of DNA methylation.80 Repression of DKK-1 activates Wnt receptor complex and JNK, a downstream effector of noncanonical Wnt signaling, which coincides with enhanced tumorigenicity of lung cancer cells in vivo.80 This study shows that environmental insults can repress Wnt antagonist(s) via polycomb-mediated epigenetic silencing, thereby modulating noncanonical Wnt signaling and enhancing the malignant phenotype of cancer cells. Ras and NF-kB signaling pathways Hyperactivation of Ras effector pathways (the extracellular signal-regulated kinase (ERK) and AKT kinase pathways) are known to promote carcinogenesis including prostate. Whereas AKT is activated by loss of the gene encoding phosphatase and tensin homolog (PTEN), the mechanism underlying ERK activation was not known. A recent systematic screen of the RasGAP family, which consists of the negative regulators of Ras signaling, has identified DAB2IP as a new tumor suppressor in prostate tumorigenesis, acting via inhibition of ERK and AKT pathways.81 Moreover, DAB2IP negatively regulates NF-kB signaling via its period-like domain. DAB2IP loss activates NF-kB pathway leading to prostate cancer invasion.81 Intriguingly, EZH2 is shown to epigenetically silence DAB2IP and activates Ras, ERK, AKT and NF-kB, whereas DAB2IP reconstitution substantially suppresses activation.81 This study provides solid in vitro and in vivo data to prove a causal role for EZH2 in concordant epigenetic regulation of two prominent oncogenic pathways, thus establishing an oncogene-tumor suppressorsignaling cascade in the promotion of prostate cancer growth and metastasis. PTEN functions as a negative regulator of the PI3K/AKT pathway via dephosphorylation of PtdIns(3,4,5)P(3) to regulate cell cycle, proliferation, apoptosis, cell adhesion, and epithelialmesenchymal-transition (EMT) during embryonic development and cancer progression.82 While PTEN loss-of-function is mainly attributed to mutation, deletion, or promoter methylation in many human cancers,82 a recent study has delineated an epigenetic silencing mechanism of PTEN via polycomb-mediated H3K27me3.83 PRC-1 and -2 subunits including Bmi-1, EZH2 and Suz12 have been shown to associate with PTEN promoter and downregulate PTEN expression through H3K27me3. Consequently, this activates the PI3K/AKT/GSK-3b pathway and enhances the invasiveness of nasopharyngeal epithelial cells via EMT83. This study provides mechanistic and functional links between PRCs and PI3K/AKT signaling in nasopharyngeal cancer progression and metastasis. 22 Beta-adrenergic receptor signaling By integrating in vitro cell line data, in vivo tumor profiling and ChIP-chip data, Yu et al. have identified adrenergic receptor beta 2 (ADRB2), a critical mediator of b-adrenergic signaling, as a key target of EZH2 in prostate cancer.30 Stimulation of ADRB2 activates b-adrenergic signaling by raising intracellular cyclic adenosine monophosphate (AMP) levels; this inhibits cell proliferation.84 In prostate cancer, EZH2-mediated transcriptional repression of ADRB2 not only promotes tumorigenesis but also enhances cancer cell invasion, thus providing a functional link between polycomb silencing and b-adrenergic signaling.30 Of potential clinical significance, administration of ADRB2 agonist significantly inhibited prostate tumorigenicity in a nude mice xenograft model.30 In clinical specimens, low ADRB2 expression is associated with poor prognosis of clinically localized prostate cancer.30 Collectively, these findings indicate that characterization of EZH2 direct target genes in key signaling pathway may be useful for the identification of novel cancer biomarkers and potential therapeutic targets. Bone morphogenetic protein and Notch signaling Bone morphogenetic proteins (BMPs) mediate a wide variety of biological responses that range from proliferation to differentiation to apoptosis, depending on developmental stage; dysregulation of the molecular effectors of BMP signaling may contribute to cancer.85 While BMP2/4 exhibits a pro-differentiative effect on neural stem cells, EZH2 expression impairs the BMP-dependent astroglial differentiation program in a subset of gliobastoma tumor-initiating cells.86 EZH2 binds to and represses BMP receptor 1B (BMPR1B), whose overexpression inhibits proliferation, increases astroglial differentiation and decreases tumorigenicity.86 Knockdown of EZH2 significantly decreases the methylation density of the BMPR1B promoter,86 an observation that concurs with the notion that EZH2 recruits DMNTs for DNA methylation in long-term epigenetic silencing.25 Intriguingly, BMPR1B is also a PRC2 target gene transcriptionally repressed in human ES cells.61 On this basis, it is hypothesized that, in a subset of gliobastoma tumor-initiating cells, the reversible repression program on the developmental regulators is replaced by permanent silencing, locking the cell into a perpetual state of self-renewal.28,86 In summary, this study depicts a molecular mechanism of astroglial tumorigenesis in which concurrent polycomb- and DNA methylation-mediated transcriptional repression of BMP effector desensitizes tumor-initiating cells to normal differentiation cues, thereby predisposing them to subsequent malignant transformation. Together with BMP and other stem cell pathways, Notch signaling is involved in both embryonic development and adult tissue homeostasis. It exerts regulatory effects by controlling proliferation and differentiation of both embryonic and adult stem cells.87 While the relationship between EZH2 and Notch signaling in cancer remains unclear, we have recently demonstrated epigenetic repression of Notch-1 in primary satellite cells, the myogenic progenitor cells, which may lead to inhibition of skeletal muscle differentiation.88 The silencing cascade is initiated by tumor necrosis factor a, an important myogenic regulator, which stimulates the Journal of Gastroenterology and Hepatology 26 (2011) 19–27 © 2010 Journal of Gastroenterology and Hepatology Foundation and Blackwell Publishing Asia Pty Ltd DPF Tsang and ASL Cheng EZH2-regulated signaling pathways EZH2 DACT3 Wnt/b -catenin Cell proliferation Anti-apoptosis DKK1 Ras Transformation Cell proliferation DAB2IP NF-kB Cell invasion ADRB2 BMPRIB b -adrenergic Transformation Cell invasion NOTCH-1 BMP Differentiation NOTCH Differentiation Tumor initiation, growth and metastasis Figure 1 EZH2-mediated epigenetic regulation of signaling pathways. EZH2 activates oncogenic signaling cascades (green boxes) and inhibits pro-differentiation pathways (red boxes) through epigenetic silencing of the negative regulators and positive effectors (blue and purple ovals), respectively, thereby establishing an oncogene-tumor suppressorsignaling paradigm in driving tumor initiation, growth and progression. As DACT3 is repressed via H3K27me3, EZH2 is implicated to be its epigenetic regulator. recruitment of EZH2 for initiate repression via H3K27me3, followed by DNMT3b-mediated DNA methylation in the Notch-1 promoter.88 Interestingly, genome-wide mapping in Drosophila has also revealed the binding of polycomb proteins in the Notch-1 homolog,70 further highlighting the significant role of polycomb in Notch signaling. Since Notch-1 signaling has been implicated in the induction of growth arrest and apoptosis in human cancers, e.g. HCC89, the potential regulation of Notch-1 signaling by polycomb/ EZH2 in tumorigenesis warrants further investigation. Collectively, these studies establish causal roles for EZH2 in driving cancer initiation, development and progression through epigenetic activation of oncogenic signaling cascades, e.g. Wnt/b-catenin, Ras, NF-kB, and inhibition of pro-differentiation pathways, e.g. b-adrenergic, BMP, Notch (Fig. 1). Therapeutic implications of EZH2-mediated signaling deregulation The silencing of important signaling components: the negative regulators of oncogenic pathways, e.g. DACT3, DKK1, DAB2IP and the positive effectors of anti-tumorigenic/pro-differentiation pathways, e.g. ADRB2, BMPR1B, NOTCH-1 by polycomb/EZH2 have major therapeutic implications. These findings underscore the utility of developing EZH2 inhibitors; such agents might suppress oncogenic pathways that have proven difficult to target directly, in the treatment of cancers. For example, the complexity of the Wnt/b-catenin pathway, which constitutes components at different subcellular levels, renders it almost intractable to therapeutic intervention.90 Given the molecular diversity and cancerspecificity of EZH2-repressed Wnt/b-catenin signal antagonists (Cheng et al., manuscript submitted),76,80 it might be prudent to treat Wnt-addicted cancers by EZH2-targeted pharmacological32 or lentiviral RNA interference91 approach. 3-deazaneplanocin A (DZNep), an S-adenosylhomocysteine hydrolase inhibitor which depletes cellular levels of PRC2 subunits, blocks the associated H3K27me3 and reactivates PRC2-silenced genes32 to induce apoptosis in malignant but not in normal cells.32,92,93 In addition, curcumin, isolated from turmeric spice, has recently been shown to downregulate EZH2 via the mitogen-activated protein kinase (MAPK) pathway, thereby identifying inhibition of polycomb function as one of the major anti-carcinogenic mechanisms of this well-known chemopreventive natural compound.94 It is conceivable that blockage of PRC2 function might inhibit multiple signaling pathways cooperatively to yield dramatic anti-tumorigenic effects, as shown in animal studies.91,92,95 Furthermore, given EZH2 is highly expressed in advanced cancers37,41,42,46 and is causal in driving metastasis,56,81 such inhibitors may also have significant therapeutic effect on metastatic cancers for which no effective curative treatment is currently available. Although polycomb-mediated epigenetic silencing has been proposed as an attractive candidate for targeted therapy,11,31,32 caution should be taken when considering the newly-identified tumor suppressive functions of polycomb proteins.96,97 For example, the PRC1 components have been shown to repress mitogenic JAK-STAT pathway in Drosophila, suggesting that polycomb proteins can restrict growth directly by silencing mitogenic signaling pathways.98 In addition, recurrent somatic mutation of EZH2, which replaces a single tyrosine (Tyr641) in the SET domain, has recently been found in a subset of diffuse large B-cell lymphomas.99 This finding, together with the discovery of mutations in the H3K27me3 demethylase UTX in several cancer types,100,101 infers that a precise balance of H3K27me3 is critical for normal cell growth.102 It is therefore necessary to dissect the oncogenic mechanisms that underlie both increased and decreased H3K27me3 activities before testing EZH2-targeted therapy in clinical trials. Future directions and conclusions It is clear that, in the post-genomic era, the ever-evolving genomic technologies have permitted an unprecedented opportunity to interrogate the binding patterns of chromatin-modifying enzymes and the associated histone modifications on a genome-wide scale and in an unbiased manner. Upcoming ChIP-chip or ChIP coupled with massive parallel sequencing (ChIP-seq) data will likely produce location analysis maps of polycomb proteins in a vast variety of immortalized nontumorigenic normal and cancer cell lines, as well as in primary malignant tissues. By comparing these datasets, we will be able to determine the commonality of binding sites for the same enzymes and histone marks among cells of different origins. Similarly, we will gain knowledge about overlap of binding sites of different enzymes and how they cooperate to produce overall epigenetic landscapes throughout the genome of the same cell type. We predict that these approaches will identify more direct polycomb/EZH2 targets involved in signal transduction cascades. Further, the results may strengthen support for the notion that polycomb-epigenetic silencing contributes to tumor formation and progression via deregulation of signaling pathways. Journal of Gastroenterology and Hepatology 26 (2011) 19–27 © 2010 Journal of Gastroenterology and Hepatology Foundation and Blackwell Publishing Asia Pty Ltd 23 EZH2-regulated signaling pathways DPF Tsang and ASL Cheng from the Food and Health Bureau, and the Direct Grant (Ref no. 2007.1.033) from the Chinese University of Hong Kong. References Figure 2 Novel approach for cancer therapy. In cancers, tumorsuppressor gene (TSG)s can be epigenetically silenced by DNA-, histone-methylation or combined mechanisms. Combinatorial epigenetic therapies targeting these machineries should reactivate these genes by chromatin remodeling and reverse the aberrant signaling cascades leading to cancer remission. Black and white circles indicate methylated and unmethylated CpG sites, respectively. Red and brown lines indicate tails of methylated and unmethylated H3K27 resulting in compacted and relaxed chromatin states, respectively. The role of chromatin structure inevitably dictates transcriptional activity. However, how global patterns of epigenetic alterations form, and the interplay between different epigenetic alterations remain unclear. Recent studies have begun to unravel the role of specific transcription factors, e.g. FOXD3103 and YY1104 in influencing epigenetic patterns during carcinogenesis. Besides, the oncogenic viral transcriptional regulators, e.g. the X protein of hepatitis B virus have been demonstrated to induce regional promoter hypermethylation and global hypomethylation.105 Ongoing studies will examine its influence on histone modifications, including H3K27me3. Intertwined histone (H3K27)- and promoter-methylation events likely contribute to tumor suppressor gene silencing and thereby aberrant signaling (Fig. 2). By delineating the crosstalk between polycomb/EZH2 and other epigenetic silencing machineries in regulation of signaling pathways in cancer, combinatorial regimes of different epigenetic-modulating drugs7,32,106 can be developed for novel, effective cancer therapy, even at advanced stages. The goal of epigenetic therapy is to achieve pharmacological reactivation of abnormally silenced tumor-suppressor genes in cancer patients. These pathways could potentially reverse the oncogenic signaling cascades and revive the pro-differentiation pathways leading to cancer remission. Acknowledgments We thank members of our laboratory for discussions. Work in our laboratory is partially supported by grants from the General Research Fund (Ref no. 09/060/GRF and 462309) from the Research Grants Council, the Research Fund for the Control of Infectious Diseases (Ref nos. 08070172, 08070332 and 09080042) 24 1 Chari R. Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer. Cancer Metastasis Rev. 2010; 29: 73–93. 2 Jones PA, Baylin SB. The epigenomics of cancer. Cell 2007; 128: 683–92. 3 Esteller M. Epigenetics in cancer. N. Engl. J. Med. 2008; 358: 1148–59. 4 Cedar H, Bergman Y. Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet. 2009; 10: 295–304. 5 Baylin SB, Ohm JE. Epigenetic gene silencing in cancer—a mechanism for early oncogenic pathway addiction? Nat. 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