Suggestions for Sample Delivery (NGS) BGI-NGS-SOP10-002 Rev. B0 January 2013 Genome Sequencing Platform ·BGI Contents 1. Objective ..................................................................................................................................................... 1 2. Applications ................................................................................................................................................ 1 3. Responsibility.............................................................................................................................................. 1 3.1 Duties of BGI Project Coordinator............................................................................................................ 1 3.2 Duties of Sample Recipients ..................................................................................................................... 1 4. Definition .................................................................................................................................................... 1 4.1 Test methods ............................................................................................................................................. 1 4.2 Test items .................................................................................................................................................. 2 4.3 Specification of Test Result ...................................................................................................................... 2 5. Workflow .................................................................................................................................................... 2 5.1 Requirements for Sample Quality ............................................................................................................. 2 5.1.1 Requirements for DNA Samples ............................................................................................................ 2 5.1.2 Requirements for DNA Tissue Sample and Blood Sample Transporting .............................................. 7 5.1.3 Requirements for RNA Sample ............................................................................................................ 11 5.1.4 Requirements for RNA Tissue Sample and Blood Sample Transporting ............................................ 17 5.1.5 Requirements for COs’ Building a Library and Transferring a Sample on Their Own ....................... 23 5.2 Requirements for Sample Shipment: ....................................................................................................... 24 5.2.1 Sample Packing .................................................................................................................................... 25 5.2.2 Sample Identification ........................................................................................................................... 26 5.2.3 Sample Transportation Requirements .................................................................................................. 27 5.2.4 Sample Transport and Receiving ......................................................................................................... 28 6. Relevant Documents ................................................................................................................................. 29 7. Relevant Records ...................................................................................................................................... 30 8. Reference................................................................................................................................................... 30 9. Appendix ................................................................................................................................................... 30 Appendix I: DNA Sample Information Sheet (Template) ........................................................................... 31 Appendix II: RNA Sample Information Sheet (Template) ........................................................................... 32 Appendix III: Tissues Sample Information Sheet (Template)....................................................................... 33 Appendix Ⅳ: Library Sample Information Sheet (Template)....................................................................... 34 Appendix Ⅴ: Contact Information and Cautions.......................................................................................... 36 Appendix A Revision Record ..................................................................................................................... 37 I Suggestions for Sample Delivery(NGS) Page: 1/39 File NO.: BGI-NGS-SOP10-002 Drafted by: Zhang Ke Audited by: Wu ZongZe, Chen Li Approved by:Hu ZhenFei Version NO.:B0 Date of Drafting: 2012-12-26 Date of auditing :2013-1-6 Date of approval:2013-1-10 Distribution NO.: 1. Objective To provide the criteria and related requirements for samples from Collaborators, and make sure that the sample collaborators (hereinafter are called “COs”) submits can produce high quality data in the standard production experiment and effectively safeguard their samples. 2. Applications The Suggestions are applicable to COs’ samples and their transporting. 3. Responsibility 3.1 Duties of BGI Project Coordinator 3.1.1 To communicate with COs about the sample submission; 3.1.2 To give instructions to COs on how to fill in the sample information sheet; 3.2 Duties of Sample Recipients 3.2.1 Make the first test of the sample after receiving it; 3.2.2 To check up the sample information sheet with the samples received; 4. Definition 4.1 Test methods Qubit®: Invitrogen Qubit® Fluorometer, or use Invitrogen Qubit® Fluorometer for DNA/RNA Quality Control. NanoDropTM: Thermo Fisher NanoDropTM ND-1000/ND-8000, or use Thermo Fisher NanoDropTM ND-1000/ND-8000 for DNA/RNA Quality Control. Agilent 2100: Agilent 2100 Bioanalyzer, or use Agilent 2100 Bioanalyzer for DNA/RNA Quality Control. Caliper LabChip GX: Caliper LabChip GX, or use Caliper LabChip GX for DNA/RNA Quality Control. AGE: Agarose Gel Electrophoresis. Q-PCR: Real-Time quantitative PCR. BGI use ABI StepOnePlus Real-Time PCR System for Q- 1 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 2/39 PCR Quality Control. 4.2 Test items v: Volume. m: Total Mass. c: Concentration. M: Molar Concentration. size: Fragment size. RIN: RNA Integrity Number. 28 S/18 S:The ratio of 28 S to 18 S, which reflects the integrity of Eukaryotes RNA. 23 S/16 S:The ratio of 23 S to 16 S, which reflects the integrity of Prokaryotes RNA. OD260/280:The ratio of OD260 to OD280, which reflects the purity of DNA/RNA. OD260/230:The ratio of OD260 to OD230, which reflects the purity of DNA/RNA. 4.3 Specification of Test Result Level A: Refers to the sample quality which not only meets the requirements for libraries construction and sequencing, but also with enough sample amounts for libraries constructing twice or more. Level B: Refers to the sample quality which meets the requirements for libraries construction and sequencing, and with the sample amount for libraries constructing only once. Level C: Refers to the sample quality which doesn't completely meet the requirements for libraries construction and sequencing, but can try libraries constructing with risk, and the sequencing quality can not be guaranteed. Level D: Refers to the sample quality which totally doesn't meet the requirements for libraries construction and sequencing, and we suggest not use such samples for libraries constructing. 5. Workflow 5.1 Requirements for Sample Quality 5.1.1 Requirements for DNA Samples COs need to provide analysis results of the DNA sample using one or several of the following 2 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 3/39 methods: Qubit®, NanoDropTM, AGE and Agilent 2100. 5.1.1.1 Quantity standard of DNA Samples Samples classified as level A are qualified and sufficient for library construction for more than twice, while those of level B are sufficient for library construction for once. Sample preparation following the standard of level A is recommended for guaranteeing a normal progress of the project. If samples fail to meet the standard even of level B, and for some reason, no more samples could be obtained, please contact BGI Project Coordinator and Project management before sample shipment for consulting. Form 1: Requirements of HiSeq-DNA samples Library Types ≤800 bp Insert Sample Types Sample with Single Band/Apparent Main Band in Electrophoresis (genome, plasmid, PCR product, etc.) Qubit®, AGE Sample for Meta-genomics Sequencing Qubit®, AGE Samples With Smear in Electrophoresis (fragmented samples, PCR product, etc.):do not need to be fragmented Samples With Smear in Electrophoresis (fragmented samples, PCR product, etc.): need to be fragmented 16 S rDNA V3/V6 PCR Free Quantitative Methods in BGI 16 S rDNA V3/V6 PCR product Quantitative result Conclusion Qubit® AGE m≥6 μg Level A c≥30 ng/μL No degradation or partially degradation 3 μg≤m<6 μg Level B m≥4 μg c≥30 ng/μL 2 μg≤m<4 μg m≥3 μg Qubit®, AGE c≥30 ng/μL 1.5 μg≤m<3 μg m≥4 μg Qubit®, AGE c≥30 ng/μL 2 μg≤m≤4 μg m≥2 μg c≥20 ng/μL 1 μg≤m<2 μg c≥10 ng/μL ® Qubit , AGE 3 No degradation or partially degradation Level A COs should confirm that BGI only provide the test results Level A COs should confirm that BGI only provide the test results Level A No degradation and genome DNA contamination, Fragment size accurately Level B Level B Level B Level A Level B Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 m≥40 μg 2 K Insert Genomic DNA Qubit®, AGE c≥133 ng/μL 20 μg≤m<40 μg m≥40 μg 5-6 K Insert Genomic DNA Qubit®, AGE c≥133 ng/μL 20 μg≤m<40 μg m≥60 μg 10 K Insert Genomic DNA Qubit®, AGE c≥133 ng/μL 30 μg≤m<60 μg m≥120 μg 20/40 K Insert Genomic DNA Qubit®, AGE c≥133 ng/μL 60 μg≤m<120 μg m≥2 μg RAD-Seq Genomic DNA ® Qubit , AGE c≥25 ng/μL 1 μg≤m<2 μg m≥20 μg Genomic DNA ® c≥30 ng/μL Qubit , AGE 10 μg≤m<20 μg PCR Free ChIP-Seq m≥6 μg PCR product with Single Band Qubit , AGE ChIP-Seq DNA samples Qubit®, Agilent 2100 ® c≥30 ng/μL 3 μg≤m≤6 μg m≥20 ng 10 ng≤m<20 ng m≥10 μg MeDIP/Bisufite Genomic DNA ® c≥50 ng/μL Qubit , AGE 5 μg≤m<10 μg m≥6 μg RRBS Genomic DNA ® c≥50 ng/μL Qubit , AGE 3 μg≤m<6 μg m≥6 μg EXON Agilent, Nimblegen EZ Genomic DNA Genotyping Genomic DNA ® c≥37.5 ng/μL Qubit , AGE 3 μg≤m<6 μg Qubit®, AGE, NanoDropTM m≥1 μg c≥50 ng/μL 0.5 μg≤m<1 μg 4 Page: 4/39 No degradation or partially degradation Level A No degradation or partially degradation Level A No degradation or partially degradation Level A No degradation or partially degradation Level A No degradation or partially degradation, No RNA contamination No degradation or partially degradation COs should confirm that BGI only provide the test results Main Peak in 100 bp-500 bp (Agilent 2100) No degradation or partially degradation No degradation or partially degradation, No protein contamination Level B Level B Level B Level B Level A Level B Level A Level B Level A Level B Level A Level B Level A Level B Level A Level B No degradation or partially degradation Level A No degradation or partially degradation Level A Level B Level B Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Fosmid/BAC Plasmid DNA Qubit®, AGE (Sampling inspection) Page: 5/39 Version NO.:A4 m≥1.5 μg 0.75 μg≤m<1.5 μg c≥15 ng/μL No degradation or partially degradation Level A Level B Form 2: Requirements of 454 GS FLX+ DNA samples Sample Type Quantitative Methods in BGI Rapid DNA library (1-2 k Insert) Genomic DNA Qubit®, AGE Amplicon library Genomic DNA Qubit®, AGE Library Types Quantitative result Qubit® m≥2 μg 1 μg≤m<2 μg m≥400 ng 200 ng≤m<400 ng Suggestion AGE Conclusion NanoDropTM c≥25 ng/μL No degradation or partially degradation Level A c≥20 ng/μL No degradation or partially degradation Level A 2.0≥OD260:OD 280≥1.8; OD260:OD230 ≥1.8 2.0≥OD260:OD 280≥1.8; OD260:OD230 ≥1.8 Level B Level B Note: According to the experimental conditions, BGI would possibly dilute the original sample before detection if the sample volume is too small (less than 15 μL). If the sample is not preserved in the 1.5 mL EP tube, BGI would change tube firstly. 5.1.1.2 Insufficient Samples, Degradation and Other Potential Risks and Suggestions to Confront Them a) Insufficient Sample Quantity: It may lead to 1) Failure in library construction; 2) Insufficient library for sequencing; 3) Contain the potential risks of poor randomness; 4) Insufficient data output or uneven coverage; 5) ChIP samples possible adapter contamination rate is on the high side. b) Quantitation using Qubit® is more accurate than using NanoDropTM and hence is used in calculating sample quantity. c) If COs intend to construct library with unqualified samples (Level C and Level D), COs shall take responsibility for it or take the risk of being involved in this matter. d) Degraded Sample (especially genomic DNA): It may lead to uneven coverage, poor randomness and high duplication, etc. e) PCR product: The OD260/280 ratio between 1.8 and 2.0 is preferably. For the PCR samples with single band and it’s fragment length is between 100 bp and 200 bp, we can sequence through all base without interrupting; For samples whose length is between 200 bp and 500 bp, interrupting fragments are needed for sequencing through, and it may affect assembly result be- 5 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 6/39 cause these samples are difficult to interrupt, and have risk of bad randomness; For samples longer than 500 bp, interrupting is needed, and the library is constructed according to genome samples strategy. f) Samples for Metagenomics Sequencing: No specific requirement for OD, preferably OD between 1.8 and 2.0. Slight contamination by protein or RNA (AGE testing) is acceptable. g) Fosmid/BAC DNA Samples: The samples are recommended to use 96 well plates for transportation. Every cloning’s concentration, total quantity and volume should maintain the same. Pure water, TE Buffer is recommended for dissolving DNA samples. Total mass as 0.75 μg are available for library construction for once. The sample’s minimum concentration should be no less than 15 ng/µl and no degradation or partially degradation. Protein and RNA contamination need to be eliminated. For Fosmid/BAC samples, BGI will not carry out sample detection or Sampling observation because of the large amount of samples. Therefore COs should provide AGE and quantitative concentration results, and BGI will construct libraries based on them. 5.1.1.3 Samples for ChIP-Seq: a) Main bands of the fragmented DNA in electrophoresis should be preferably in the range of 100500 bp, mainly peak within 200-300 bp, with the optimal length 250 bp or so. b) Please indicate the size of DNA fragments clearly,including the range and position of the main band. c) We suggest to validate the reliability of ChIP experiment by choosing a reasonable positive DNA binding region for Q-PCR experiment after ChIP enrichment, but this method is not suitable for the ChIP experiment that without positive control sequence. d) In ChIP experiment, although the fragment ranges of supersonic results is from 100 bp to 500 bp, the differences still exist after antibody enrichment, in very occasionally, it is longer than 500 bp or shorter than 100 bp which will cause library unqualified. So, for some samples, we failed to construct libraries although the total mass passes our test. e) ChIP sample contains other species DNA contamination; it may lead to sequencing data quality is bad. ChIP in the experimental process, and will exist exogenous species of DNA evidence contamination samples in very accidental circumstances, and this only in sequencing finish, carries on the analysis comparison will be found. So suggest COs in the ChIP experiment, the experimental process in strict control, so as to reduce the risk. f) ChIP sample contains significant protein or the concentration of the ions too high or other 6 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 7/39 impurities contamination may make the 2100 peak figure anomaly detection, and influence enzyme reaction in the process of construct library, resulting in the failure of construction libraries. 5.1.1.4 Library with Inserted DNA Fragment Longer Than 5 kb If construct 5-10 K insert library, COs should running the sample using AGE (0.6% gel, choosing λHind III digest marker or other ladder with bands of 20 kb or above, and electrophoresis at 80-120 V for 40-150 minutes), the longest genomic DNA band should be longer than 23 kb. If construct 2040 K insert library the pulse-field electrophoresis is suggested to using, and DNA main band should be longer than 40 kb. 5.1.1.5 Samples for RAD-Seq a) The final data distribution of sample for RAD-Seq results with sample quantitative accuracy of a great relationship. In the mean time, polysaccharide or protein can also affect the restriction enzyme digestion, to result in poor data distribution. b) Please as far as possible to provide the same batch of genomic DNA samples, lest because of different batch extraction effect to different effect of enzyme digestion. c) Be sure to use RNase enzyme treatment genome DNA samples (especially plant samples), so as not to affect quantitative accuracy of sample. d) Level C sample for RAD-Seq can use to construction non-target reads library, but contains the potential risks of poor data. 5.1.1.6 Samples for 16 S rDNA V3/V6 PCR Free This kind of sample need to do genome and V3/V6 area of PCR product QC, only two kinds of testing are qualified we will constructed PCR free library. 5.1.1.7 Please purify samples, avoiding contamination by polycarbonate, protein and exonclease. Please clearly state the nature of the solvent used in the sample in Sample Information Form in shipment. 5.1.2 Requirements for DNA Tissue Sample and Blood Sample Transporting Declaration: For any pathogenicity or infectious sample (tissue, blood, bacterium etc), clear risk sign must be attached on the sample tubes or bags. 5.1.2.1 Requirements for Total Quantity Demanded 7 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 8/39 Version NO.:A4 Form 3: Requirements of Total Amount of DNA Tissue Samples Sequencing Type DNA Insert ≤800 bp DNA Insert 2-5 kb DNA Insert 5-10 kb DNA Insert ≥20 kb MeDIP / Bisulfite Exon Genotyping Dry Weight of Fresh Animals tissue ≥1 g ≥2 g ≥3 g 3-5 g 1-2 g ≥1 g ≥1 g Dry Weight of Fresh Plants tissue ≥1 g ≥2 g ≥5 g ≥10 g 1-2 g ≥2 g ≥1 g The Number of Fresh Culture cells ≥8×106 ≥9×106 ≥5×107 ≥5×107 ≥9×106 ≥8×106 ≥4×106 Whole Blood ≥1 mL ≥5 mL ≥10 mL 20-50 mL ≥5 mL ≥2 mL ≥1 mL Meta ≥2 g N/A N/A N/A N/A N/A N/A ≥1 g ≥2 g ≥3 g 3-5 g N/A N/A N/A ≥5 mL ≥25 mL ≥50 mL N/A N/A N/A N/A Thallus (Dry Weight) Bacterium Fluid (Logarithmic Phase) Note: DNA production varies greatly with different types of sample. E.g. the whole blood sample of human and mammal of which erythrocyte lacks a nucleus, and we can get low DNA production, so a bigger sample volume is demanded. In contrast, for bird or fish blood, in which erythrocyte has nucleus, more DNA can be yielded, so a less sample volume is demanded. As for muscle tissues containing abundant muscle fibers and lipid, complex plants containing high amylase and polyphenol, a bigger sample volume is demanded because of their limited DNA yield. We can get 20-30 μg DNA from 50 mg liver tissue which has an active metabolism, so the sample volume can be reduced appropriately. 5.1.2.2 Microorganism Samples a) Bacterium Fluid: Take single colonies into suitable volume liquid medium (50-100 mL) in the appropriate temperature training for the night, OD600 0.6-0.8 is advisable (Logarithmic Phase); and then transfer to 50 mL centrifugal tube, with parafilm film sealed. Transport it with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. b) Thallus: Collect the bacterium fluid in centrifuge tubes by centrifugation, seal tubes with parafilm, and put them into 50 mL centrifuge tubes. Transport them with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 8 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 9/39 c) Culture dish: Seal the dish with parafilm, and put it into seal bags. Transport it with a large volume of dry ice. 5.1.2.3 ChIP-Seq Cell Samples For ChIP-Seq cell samples: 5107 cells are required for one sample preparation (for human or mouse cell line, 1107 cells can try to IP). Total cell number for multiple preparations = number of sample preparation × 5107. COs should also offer a small amount of sample (1/10 of total samples) individually repacked in a tube for us to do early experiment. Special category tissues must submit a consultation in advance extraction. 5.1.2.3.1 Cross-linking Chromatin Immunoprecipitation a) Prepare the 1% formaldehyde with PBS (pH=7.0); b) Collect the cells in 15 mL centrifuge tubes by centrifugation, Crosslink by adding 1% formaldehyde and rocked for 10 min at 37 oC; c) Stop the cross-linking by adding glycine to a final concentration of 125 mM. Continue to rock at room temp for 5 min; d) Wash the cell two times with ice-cold 1×PBS. Then add into 1×PBS (1 mL) plus protease inhibitors and transfer to 1.5 mL EP tube and collected by centrifugation, quickly freeze them in liquid nitrogen, then transport them with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 5.1.2.3.2 Native Chromatin Immunoprecipitation a) Collect the cells in 15 mL centrifuge tubes by centrifugation; b) Wash the cell two times with ice-cold 1×PBS; c) Cell pellets are resuspended in 1×PBS (1 mL) plus protease inhibitors and transfer to 1.5 mL EP tube and collected by centrifugation, quickly freeze them in liquid nitrogen, and then transport them with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 5.1.2.4 Requirements for Tissue Sampling 1) Plant Tissue Please use 70% alcohol to rinse out dust and mud on the surface of materials obtained in the field or countryside, then blot up the water, quickly freeze them in liquid nitrogen, and put them into 9 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 10/39 precooled 50 mL centrifuge tubes or seal bags. Then transport them with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 2) Animal Tissue Tissues drawn from living bodies should be rinsed with 0.9% normal saline to remove blood dirt and contaminants, then eliminate connective tissue and adipose tissue as well as other tissues that are not needed for research. Then the tissues are divided into small pieces of about 50 mg, and put into 1.5 mL or 2.0 mL EP tubes, quickly frozen in liquid nitrogen. Then put EP tubes into precooked 50 mL centrifuge tubes or seal bags. Transport it with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 3) Blood The sample is required to be a whole blood one, and anticoagulant needs to be added in the sample. Suggest to use the EDTA anticoagulation tube collection (Please do not use heparin anticoagulation). The sample needs to be transported with a large volume of dry ice after having been frozen and to ensure that there is still sufficient dry ice when we get the samples. 4) Culture cells a) Remove cell culture medium after culturing or disposal of adherent cells or suspension cells; b) Wash with PBS buffer quickly, to remove the PBS buffer. Adherent cells can be removed with a cell scraper. c) Transfer collected cells to a 1.5 mL EP tube, quickly freeze them with liquid nitrogen, and then transport them with the dry ice. 5.1.2.5 Cautions 1) It is necessary to distinguish normal or abnormal tissue accurately. If possible, it is recommended to decide which part is sampled according to a frozen section report. 2) It is suggested that the disposal and incision of tissue sample should be carried out on ice for DNA experimental sample preparations. It will lead to DNA degradation if it takes too much time. 3) Pathological or normal samples collected during clinic operation should be preserved in liquid nitrogen right away after incision, if they could not be treated immediately when they are obtained from an operating room. 10 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 11/39 Version NO.:A4 5.1.3 Requirements for RNA Sample 5.1.3.1 Please provide analysis results of the RNA sample using one or several of the following methods: Qubit®, NanoDropTM, AGE and Agilent 2100. 5.1.3.2 Please purify samples, avoiding contamination by polycarbonate, protein and exonclease. Please clearly state the nature of the solvent used in the sample in the Sample Information Form in shipment. 5.1.3.3 Requirements for Concentration, Purity, and Total Amount of RNA Samples a) When we test sample integrity by Agilent 2100, we will consider comprehensively the species, distribution of basic line, 5 S peak etc. as well as the following parameter table. b) Based on Agilent 2100 results, we get concentration and total amount information, Based on NanoDropTM results, we get OD value for sample purity. c) Samples classified as level A are qualified and sufficient for library construction for more than twice, while those of level B are sufficient for library construction for once. Sample preparation following the standard of level A is recommended for guaranteeing a normal progress of the project. If samples fail to meet the standard even of level B, and for some reason, no more samples could be obtained, please contact BGI Project Coordinator and Project management before sample shipment for consulting. Form 4: Requirements of HiSeq-RNA samples Library Types Sample Types Quantitative Methods in BGI Total RNA of Plant, Fungi Agilent 2100, NanoDropTM Quantitative result m≥40 μg Total RNA of Human, Rat and Mice 20 μg≤m<40 μg m≥10 μg Agilent 2100 5 μg≤m<10 μg RNA-Seq (Transcriptome) c≥250 ng/μL RIN≥6.5 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. c≥65 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. c≥150 ng/μL The baseline is smooth and 5 S peak is normal. N/A The baseline is smooth and 5 S peak is normal. N/A m≥20 μg Total RNA of Insect Agilent 2100 10 μg≤m<20 μg m≥20 μg Total RNA of other Animals NanoDropTM Agilent/AGE c≥150 ng/μL RIN≥7.0 28 S/18 S≥1.0 Agilent 2100 10 μg≤m<20 μg 11 OD260/280≥1.8 OD260/230≥1.8 Conclusion Level A Level B Level A N/A Level B Level A Level B Level A Level B Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Total RNA of Prokaryotes RNA-Seq (Quantification) TruSeq (Transcriptome) Agilent 2100, NanoDropTM ds cDNA (Prokaryotes, Eukaryotes) Not including PCR product, fragmented samples NanoDropTM, AGE, Qubit® mRNA purified with oligo(dT) or RNA depleted of rRNA Agilent 2100 Total RNA of Plant, Fungi Agilent 2100, NanoDropTM Total RNA of Human, Rat and Mice Agilent 2100 Total RNA of Insect Agilent 2100 Total RNA of other Animals Agilent 2100 mRNA purified with oligo(dT) or RNA depleted of rRNA Agilent 2100 Total RNA of Plant, Fungi Agilent 2100, NanoDropTM Total RNA of Human, Rat and Mice Version NO.:A4 m≥10 μg c≥65 ng/μL RIN≥6.0 23 S/16 S≥1.0 5 μg≤m<10 μg The baseline is smooth and 5 S peak is normal. OD260/280≥1.8 OD260/230≥1.8 m≥2 μg Level A Level B Level A c≥15 ng/μL Mainly fragment>1 K 1.8≤OD260/280 ≤2.2 1 μg≤m<2 μg Level B m≥0.2 μg m≥10 μg 5 μg≤m<10 μg m≥4 μg 2 μg≤m<4 μg c≥20 ng/μL rRNA<10% Mainly fragment>1 K N/A c≥200 ng/μL RIN≥6.5 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. OD260/280≥1.8 OD260/230≥1.8 c≥80 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥200 ng/μL The baseline is smooth and 5 S peak is normal. N/A c≥200 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥15 ng/μL rRNA<10% Mainly fragment>1 K N/A c≥20 ng/μL RIN≥6.5 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥5 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. c≥20 ng/μL The baseline is smooth and 5 S peak is normal. m≥10 μg 5 μg≤m<10 μg m≥10 μg 5 μg≤m<10 μg m≥0.1 μg m≥2 μg 1 μg≤m<2 μg m≥400 ng Agilent 2100 200 ng≤m<400 ng m≥2 μg Total RNA of Insect Page: 12/39 Agilent 2100 1 μg≤m<2 μg 12 Level C Level A Level B Level A Level B Level A Level B Level A Level B Level C Level A Level B Level A N/A Level B Level A N/A Level B Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 m≥2 μg LncRNA-Seq Total RNA of other Animals Agilent 2100 Total RNA of Human, Monkey, Rat and Mice Agilent 2100 c≥20 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥200 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥200 ng/μL The baseline is smooth and 5 S peak is normal. N/A The baseline is smooth and 5 S peak is normal. N/A 10 μg≤m<20 μg c≥200 ng/μL RIN≥8.0 28 S/18 S≥1.5 1 μg≤m<2 μg m≥10 μg 5 μg≤m<10 μg m≥20 μg Total RNA of Insect Small RNA 10 μg≤m<20 μg m≥20 μg Level B Level A Level B Level A Level B Level A Agilent 2100 Serum/Plasma RNA/ RNA Immunoprecipitation Agilent 2100 pico m≥50 ng c≥1 ng/μL N/A N/A Level C Small RNA (<200 nt) Agilent 2100 m≥1 μg c≥20 ng/μL N/A N/A Level C m≥400 μg c≥1 μg/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. c≥1 μg/μL The baseline is smooth and 5 S peak is normal. N/A c≥1 μg/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. OD260/280≥1.8 OD260/230≥1.8 c≥200 ng/μL rRNA<10% Mainly fragment>1 K N/A c≥80 ng/μL RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥80 ng/μL The baseline is smooth and 5 S peak is normal. N/A The baseline is smooth and 5 S peak is normal. OD260/280≥1.8 OD260/230≥1.8 Agilent 2100 200 μg≤m<400 μg m≥400 μg Total RNA of Insect Agilent 2100 Total RNA of Plant, Fungi Agilent 2100, NanoDropTM poly(A)mRNA Agilent 2100 Total RNA of Animals DGE Agilent 2100 Level A Total RNA of other Eukaryotes Total RNA of Animals Degradome sequencing Page: 13/39 Version NO.:A4 200 μg≤m<400 μg m≥400 μg 200 μg≤m<400 μg m≥2 μg m≥8 μg Agilent 2100 4 μg≤m<8 μg m≥8 μg Total RNA of Insect Agilent 2100 Total RNA of Plant, Fungi Agilent 2100, NanoDropTM 4 μg≤m<8 μg c≥80 ng/μL RIN≥6.5 28 S/18 S≥1.0 m≥8 μg 4 μg≤m<8 μg 13 Level B Level A N/A Level B Level A Level B Level A Level B Level C Level A Level B Level A Level B Level A Level B Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 poly(A)mRNA Agilent 2100 Page: 14/39 Version NO.:A4 c≥20 ng/μL rRNA<10% m≥0.1 μg Mainly fragment>1 K N/A Level C Form 5: Requirements of 454 GS FLX+ RNA samples Library Types Sample Types Quantitative Methods in BGI Total RNA of Plant, Fungi Agilent 2100, NanoDropTM Total RNA of Human, Rat and Mice RNA-Seq (Transcriptome) Total RNA of Insect Total RNA of other Animals mRNA purified with oligo(dT) or Quantitative result m≥100 μg 50 μg≤m<100 μg m≥40 μg Agilent 2100 20 μg≤m<40 μg c≥400 ng/μl RIN≥6.5 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. OD260/280≥1.8 OD260/230≥1.8 c≥200 ng/μl RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥400 ng/μl The baseline is smooth and 5 S peak is normal. N/A c≥200 ng/μl RIN≥7.0 28 S/18 S≥1.0 The baseline is smooth and 5 S peak is normal. N/A c≥20 ng/μl rRNA<10% Main fragment>1 K N/A m≥100 μg Agilent 2100 50 μg≤m<100 μg m≥40 μg Agilent 2100 20 μg≤m<40 μg Agilent 2100 pico NanoDropTM Agilent/AGE m≥0.2 μg RNA depleted of rRNA Conclusion Level A Level B Level A Level B Level A Level B Level A Level B Level C Note: RNA-Seq for 454 GS FLX+ platforms is currently under R&D progress. The requirement may be higher or lower than the table above in project implementation. Note: According to the experimental conditions, BGI would possibly dilute the original sample before detection if the sample volume is too small (less than 15 μL). If the sample is not preserved in the 1.5 mL EP tube, BGI would change tube firstly. 5.1.3.4 Possible Emerging Risks and Suggestions in Case of Deficient or Degradable Samples a) Deficient or too Low Quantity of RNA: It may lead to library construction failure, too low library production to sequence or insufficient sequencing data quantity; and it may affect data randomness and cause bias. b) Sample Degradation: It may lead to library construction failure; may lead to high proportion of duplication and poor randomness of RNA-Seq data; may lead to high proportion of rRNA contamination in small RNA sequencing, affect the effective data ratio and lead to abnormal distribution of library fragment length. May lead to inaccurate gene expression quantitation in 14 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 15/39 DGE. c) Small RNA Serum/Plasma RNA: Sample concentration is too low to detect accurate sample concentration, purity and integrality. The risk of library construction is very high, may leading to failure; there may be high adaptor contamination proportion and cause low alignment rate to reference genome. d) Low content of small RNA: For some samples, total RNA can reach sample requirement, but the content of small RNA is much lower than that in normal samples (e.g. Cultivated cells) because of sample specificity, which may lead to library construction failure e) Small RNA (<200 nt) Samples: We only recycle Small RNA below 200 nt. We cannot estimate the integrity of RNA and the ratio of degradation of rRNA/tRNA in samples. rRNA contamination rate could be too high in library to obtain effective data. f) Contamination by Protein or Insoluble Impurity: It may affect normal electrophoretic separation, result in incorrectness of cutting gel, and affect library quality. It also may affect the efficiency of mRNA isolation using magnetic bead and reverse transcription and then leads to library construction failure. Even library is carried out sequencing; it may lead to poor randomness of RNA-Seq library, high proportion of duplication and inaccurate gene expression quantitation (common in plant sample containing much saccharides and phenols). g) The 260/280 and 260/230 absorbance ratio <1.8:It may lead to library construction failure, library production too low to sequence or insufficient sequencing data quantity; and it may affect randomicity and cause bias. The closer to the standard the smaller risk, conversely the bigger. h) Remove the Remains of rRNA in Samples: The remains may lead to too high ratio of rRNA in sequencing data. i) cDNA, mRNA Samples: Integrity of RNA is hard to test, Sequencing Quality cannot be guaranteed. j) 5 S peak on the high side will affect the quantitative veracity and conduce to the downstream inaccuracy and the poor data. k) Samples infected by virus: It may have high ratio of virus sequence in the library, and may lead to low quantity sequencing result. 15 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 l) Version NO.:A4 Page: 16/39 Not receiving viral RNA: The viral RNA has certain infectious, BGI receive only the viral cDNA sample. If COs insist on constructing library with samples that are deficient or in too low quantity or degraded ones, COs shall take responsibility for it or take the risk of being involved in this matter. 5.1.3.5 The Below Samples Belong to Level C, and We Can Try to Construct These Samples a) The RIN value is slightly under standard, but basic line is smooth. b) The RIN value reaches standard, but basic line is slightly rise. c) The 28 S/18 S or 23 S/16 S value is slightly under standard, but basic line is smooth. d) The 28 S/18 S or 23 S/16 S value reaches standard, but basic line is slightly rise. e) Basic line is smooth and the RIN value reaches standard, but the 5 S peak is a little high. f) The quality is qualified, but total amount below Level B. 5.1.3.6 Agilent 2100 with RNA Integrality 16 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 17/39 Version NO.:A4 5.1.4 Requirements for RNA Tissue Sample and Blood Sample Transporting Declaration: For any pathogenicity or infectious sample (tissue, blood, bacterium etc), clear risk sign must be attached on the sample tubes or bags. 5.1.4.1 Total Quantity Demanded Form 6: Requirements of Total Amount of RNA Tissue Samples Small RNA RNA-Seq (Transcriptome) Digital Gene Expression RNA-Seq (Quantification) Dry Weight of Fresh Animal Tissue 500 mg-1 g 1-2 g 500 mg-1 g 1-2 g Dry Weight of Fresh Plant Tissue 1-2 g 3-4 g 1-2 g 2-3 g The Number of Fresh Culture Cells 3-5×106 6-8×107 4-5×106 1-2×107 Serum up to 5 mL N/A N/A N/A Whole Blood up to 5 mL up to 5 mL up to 5 mL up to 5 mL Thallus Up to 50 mL fresh microbial culture medium or one 90 mm culture dish Up to 50 mL fresh microbial culture medium or two 90 mm culture dishes Up to 50 mL fresh microbial culture medium or one 90 mm culture dish Up to 50 mL fresh microbial culture medium or one 90 mm culture dish Amount/Sequencing Type 17 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 18/39 Note: RNA production varies greatly with different types of sample. E.g. the whole blood sample of human and mammal of which erythrocyte lacks a nucleus, and we can get low RNA production, so a bigger sample volume is demanded. In contrast, for bird or fish blood, in which erythrocyte has nucleus, more RNA can be yielded, so a less sample volume is demanded. Muscle tissue contains abundant muscle fibers and lipid, the complex plant contains high amylase and polyphenol, so a bigger sample volume is demanded because of their low RNA yield. We can get 20-30 μg RNA from 50 mg liver tissue which has an active metabolism, so the sample amount can be reduced appropriately. 5.1.4.2 Requirements for Tissue Sampling The routine method for tissues treatment is liquid nitrogen flash freezing: a) Prepare sufficient liquid nitrogen and 50 mL or 15 mL centrifuge tubes, and filled the tube with liquid nitrogen (Notice: puncture the tube lid first, or the liquid nitrogen may expand rapidly and explodes ). b) Tissues taken from living bodies should be rinsed quickly and frozen in the centrifuge tubes from step (1), and then can be stored at -80 °C after freezing in liquid nitrogen(Notice: do not put the sample into the centrifuge tube first and then fill with liquid nitrogen ). c) If the tissues could not be collected in a centrifuge tube, it should still be frozen in liquid nitrogen, and another suitable vessel can be used to preserve it. Before storage at -80 °C, the vessel with tissues should be frozen in liquid nitrogen also. d) Transport it with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 5.1.4.2.1 Plant Tissue Please use DEPC-H2O to rinse out dust and mud on the surface of materials obtained in the field or countryside, then blot up water and cut the sample into small plots of about 100 mg, then put the plots into 1.5 mL or 2.0 mL RNase-free EP tubes, and add tissue preservation reagents like RNAlater (reagent of ABI company’s is strongly recommended Please follow the instructions strictly.) In order to let RNAlater permeate into the tissue, some plants’ natural barrier, which could prevent from evaporation of water like waxy skin of leaf tissue, needs to be broken through, so as to allow RNAlater access into the tissue. Seal the tubes with parafilm after it is quickly frozen with liquid nitrogen, and then put the EP tubes into 50 mL centrifuge tubes or small plastic bags with good tightness. Then transport it with a large volume of dry ice and to ensure that there is still suffi- 18 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 19/39 cient dry ice when we get the samples. 5.1.4.2.2 Animal Tissue Tissues drawn from living bodies should be rinsed with 0.9% normal RNase-free saline immediately to remove blood dirt and contaminants, and then eliminate connective tissue and adipose tissue as well as other tissues that are not needed for research. Then put the plots into 1.5 mL or 2.0 mL EP tubes of RNase-free, add tissue preservation reagents such as RNAlater. Then put the EP tubes into 50 mL centrifuge tubes or small plastic bags with good tightness. Then transport it in a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. Please freeze the samples following above specific details; the tips for trace samples are listed as follows: Firstly, immersing trace samples in liquid nitrogen. Secondly, to grinding the tissues powdered under the protection of liquid nitrogen and adding a sufficient amount of lysate for cracking reaction, 60 mg/mL Trizol is recommended. Finally, the normal-temperate lysis above 5 min and transport it by enough dry ice. 5.1.4.2.3 Tumor Tissue It is necessary to distinguish normal from abnormal tissue accurately. If possible, it is recommended to collect samples according to the report on frozen section. Freeze immediately ex vivo tissue with liquid nitrogen. Then put the plots into 1.5 mL or 2.0 mL EP tubes of RNase-free, add tissue preservation reagents like RNAlater. And put the EP tubes into 50 mL centrifuge tubes or small plastic bags with good tightness. Then transport it in a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. 5.1.4.2.4 Microorganism Samples a) Thallus: If you need liquid culture of microorganisms, pick monoclonal in 50 mL liquid medium, usually at 37 oC culture overnight. If the OD600 is between 0.6-0.8, it indicates that the strong growth of bacteria in logarithmic growth phase. Collect the bacterium fluid in centrifuge tubes by centrifugation, add tissue preservation reagents such as RNAlater, seal tubes with parafilm, and put them into 50 mL centrifuge tubes. Transport them with a large volume of dry ice and to ensure that there is still sufficient dry ice when we get the samples. b) Culture dish: Plate cultivation of microorganisms, flat way to send samples. Seal the dish with parafilm, and put it into seal bags. Transport it with a large volume of dry ice. 5.1.4.3 Operation Process of Cell and Blood Sampling 5.1.4.3.1 Adherent Cells 19 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 20/39 a) Remove cell culture fluid after culturing or disposal of adherent cells; b) Add Trizol reagent in the proportion of 1 mL Trizol reagent every 10 cm2 culture space; c) Beat upon with 1 mL pipettor repeatedly to make sure all the surface of culture bottles culturing cells could contact the regent, so that the cells could be digested sufficiently; d) Transfer the cells into the RNase-free tube and beat upon repeatedly with disposable syringe until there are not any visible conglobate cell blocks. The whole liquor should be clear and not melicera; e) Preserve in dry ice or refrigerator at -80 oC. 5.1.4.3.2 Suspension Cells a) The cells collected by centrifugation after culturing or disposal and remove the cell culture medium. b) Rinse preserved cells quickly with PBS buffer, and then centrifugalize to remove PBS buffer. c) Add Trizol reagent in the proportion of 1mL Trizol reagent every 5×106 cells, and beat upon repeatedly with disposable syringe until there are not any visible conglobate cell blocks. The whole liquor should be clear and not melicera. d) Preserve in dry ice or -80 oC refrigerator. 5.1.4.3.3 Blood a) Add an equal volume of PBS (1×) in fresh whole blood with anticoagulant and mix it sufficiently. b) Slowly transfer it into another centrifuge tube with lymphocyte separating solution in order to keep it above the lymphocyte separating solution (that is to say, do not mix these two types of liquid and keep clear interface), then centrifugalize with 3000 g for 30 minutes. c) Transfer the leucocytes layer with pipettor carefully, and then rinse it with PBS (1×) and centrifugalize to retain the leukocyte, and remove the supernatant. d) Add Trizol reagent with the amount of 20 times volume of leukocyte and beat upon repeatedly with disposable syringe until there are not any visible conglobate cell blocks. The whole liquor should be clear and not melicera. e) Preserve in dry ice or refrigerator at -80 oC. If not able to do lymphocyte separation, please follow the requirements for blood sample 20 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 21/39 preparation as below: Under normal temperature conditions, collect 500 µl fresh whole blood to RNAprotect ® Animal Blood Tubes (500 µl), Total quantity demanded of whole blood must 2 mL for birds、5 mL for other animals, close the lid immediately, inverted gently for 8-10 times, and deliver it with a large volume of dry ice. Send 5 mL or more samples. 5.1.4.3.4 Serum Normally it takes 1 hour to separate serum from the blood clotting. Even if using heating centrifugal, which may cause the hemolysis; it also needs half an hour. The blood coagulant agent is added to fresh blood to speed up the serum generation, and shorten the period of collecting serum. The serum should immediately be kept in the -80 oC refrigerator after collected. To ensure the success rate of serum extraction, at least of 5 mL of serum is needed, which should be quick-frozen with liquid nitrogen and transported with dry ice. The production of microRNA may differ because of different sources of serum, and they need special treatment. 5.1.4.3.5 Cautions a) It is suggested that the disposal and incision of tissue sample should be carried out on ice for RNA experimental sample preparations. Disposal for a long time will lead to degradation. b) Pathological or normal samples collected during clinic operation should be preserved in liquid nitrogen immediately, if they could not be treated right away. 5.1.4.4 The Existing Extraction Risks and Suggestion for Insufficient Tissue Amount or Freezethaw Tissue Tissue extraction may be affected by upstream and downstream treatment of the tissue, so there is higher risk and it is hard to guarantee the quantity. COs should backup the tissue before they send it. a) Insufficient Tissue:Low production of RNA, could not reach library construction initial amount may lead to library construction failure, especially plant leaves, fruit, root tuber and rhizoma that contain high concentration of polysaccharide and polyphenol and other unknown composition. In this case, it is more difficult to extract tissue so there should be enough amounts. b) Repeated Freeze-thaw Tissue:Degradation proportion of RNA is above 80% and it is impossible to extract RNA and the quantity cannot meet library construction requirement. We do not 21 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 22/39 suggest COs to send this kind of tissue. COs should make sure the tissue is not repeated freezethaw before they send, especially RNase active tissues from animal liver, spleen, kidney, heart, fat, brain or tumor. c) Long-term Preserved Tissue:For the tissue samples from specimens preserved for over one year, risk of RNA extract would increase. Due to low quantity samples are not suggested to send. These kinds of specimens include animal/plant tissue, various thallus and algae. d) Tissues:Animal/Plant tissue, i.e. plant old root, plant fruit tissue, animal liver, adipose, brain tissue, since they have active RNase, after tissues separate with main body, make sure to soak them into liquid nitrogen to froze quickly and storage in refrigerator at -80 oC. Or slice them into 2-3 thick pads under liquid nitrogen and then immersed to RNAlater protect reagent. If tissue would not be treated in 1 minute after separating, the RNase would degrade RNA in a significant speed. Accordingly it would hard to maintain the RNA quantity. e) Blood Serums:Serum contain up to hundreds of components, i.e. Complex protein, polysaccharide, and most of them are unknown, which will increase the risk of extract. Therefore, we recommend sending serum samples above 5 mL. f) Whole Blood Sample:To ensure the extraction success rate, Please COs cooperate with us to complete the lymphocyte separation, sending samples with Trizol lysis buffer or RNAlater protection reagent. If lymphocytes separation conditions are not allowed, please collect all fresh blood about 60 µl, putting into RNAprotect® Animal Blood Tubes(100 µl)(QIAGEN Ltd.). If all three methods above are hardly to do so, please COs extract by your own. If COs insist on sending samples, COs shall take responsibility for it or take the risk of being involved in this matter. g) Trace Tissue:Animal tissue < 200 mg, Plant tissue < 1 g, Cell numbers < 105, Serum quantity < 5 mL, Pure blood volume < 2 mL (Birds), Pure blood volume < 5mL (other fauna). It is mainly for the more precious and scarce samples. In consideration of samples are special and precious, these kinds of samples are not accepting RNA extraction work, please COs extract by your own. If COs insist on sending samples, COs shall take responsibility for it or take the risk of being involved in this matter. h) Complex Samples:Polysaccharide polyphenol unusually high amounts of old root plants, mature rice, highland barley, strawberry fruit, pine, algae, cotton, fungi, and component extremely complex tumor tissue. In consideration of either these kinds of samples’ extraction are not mature or to avoid influencing the COs’ research progress by sending samples from and to, 22 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 23/39 BGI is not accepting RNA extraction work, please COs extract by your own. If COs insist on sending samples, COs shall take responsibility for it or take the risk of being involved in this matter. i) Special Samples:FFPE sample, LCM sample, urine, milk, gastric fluid, saliva, intestinal microorganisms. In consideration of much less of experience of extraction of such samples, BGI is not accepting RNA extraction, please COs extract by your own. If COs insist on sending samples, COs shall take responsibility for it or take the risk of being involved in this matter. j) Virus organization: Plague, anthrax, bird flu, foot-and-mouth disease, these highly infectious virus need in P3 laboratory operation. The present experimental conditions are not allowed to operate such sample. So it does not receive some kind of sample extraction and detection. 5.1.5 Requirements for COs’ Building a Library and Transferring a Sample on Their Own 5.1.5.1 Please provide analysis results measured by using one or several methods of Qubit®, NanoDropTM, Gel Electrophoresis, Caliper LabChip GX and Agilent 2100. Agilent 2100 and Caliper LabChip GX is strongly recommended,in order to get a perfect repeatable result with the detections of BGI. Agilent DNA 1000 kit (for Agilent 2100) and HT DNA 1K LabChip (for Caliper LabChip GX) is recommended. 5.1.5.2 Suggested Sample Concentration of Agilent 2100/Caliper LabChip GX Testing Form 7: Requirements of HiSeq Library Samples Library Category Concentration(nM) Total Quantity Demanded(×10-3 pmol) Transcriptome Library ≥3.5 ≥82.25 Expression Library ≥1.3 ≥30.55 Small RNA Library ≥1.5 ≥35.25 ChIP Library ≥2.8 ≥65.80 Exome Capture Library ≥4.0 ≥94.00 DNA Short Fragment Library(0-499 bp) ≥4.3 ≥101.05 DNA Long Fragment Library(500-800 bp) ≥4.3 ≥101.05 DNA Large Fragment Library(≥800bp) ≥3.7 ≥86.95 Methylation Library ≥3.4 ≥79.90 23 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 24/39 Version NO.:A4 Note: According to the experimental conditions, BGI would possibly dilute the original sample before detection if the sample volume is too small (less than 15 μL). If the sample is not preserved in the 1.5 mL EP tube, BGI would change tube firstly. The above concentration is the minimum requirement of library construction, i.e., for only one round of sequencing. The final result is based on our qPCR result. Refer to Illumina qPCR Quantification Protocol Guide. a) If standard Illumina kit is used, please indicate the type and the log number of the kit. If another kit is used, the COs should provide information on methodology, kit use and its brand, the sequences of the adaptor and PCR primers, and the expected fragment size of the libraries. If the sample is indexed, please indicate the position and the sequence of the index. Please specify if the library is partially constructed. b) Library has to be purified to remove primer dimer contamination. Primers dimer would greatly affect the quality of sequencing. c) If the sample is a PCR product or has special sequence inserted, please indicate it in the Information Sheet, otherwise the quality of sequencing data will be greatly affected. d) Components of the solvent must be clearly indicated. e) The insert fragment size of the library must be less than 600 bp; otherwise the quality of sequencing will be greatly affected. f) Sequencing primers provided by COs can be in powder or solution. For powder, its minimum quantity should be > 1OD. For solution, the concentration of the solution should be at least 100μM, with the minimum volume described as follows (Form 9). Form 8: Requirements of Sequencing Primers Sequencing Primer Volume Read 1 primer 3μl/lane+6μl Index primer 45μl/flowcell+45μl Read 2 primer 45μl/flowcell+45μl Form 9: Requirements of 454 GS FLX+ Library Samples Library Type Concentration (108 molecule/μL) Volume (μL) 24 Quantity(1010 molecule) Small fragment Contamination Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Rapid DNA library ≥2.0 ≥50 ≥1.0 Rapid cDNA library ≥2.0 ≥50 ≥1.0 Page: 25/39 Fragment less than 650 bp≤10% Fragment less than 500 bp≤10% Form 10: Requirements of 454 GS FLX+ Amplicon Library Samples Library Type Concentration (ng/μL) Volume(μL) Quantity(ng) Amplicon Library ≥5 ≥10 ≥50 Note: Libraries for 454 GS FLX sequencing should be amplified using primer set Lib-A (Forward: CGTATCGCCTCCCTCGCGCCATCAG; Reverse: CTATGCGCCTTGCCAGCCCGCTCAG) or Lib-L (Forward: CCATCTCATCCCTGCGTGTCTCCGACTCAG; Reverse: CCTATCCCCTGTGTGCCTTGGCAGTCTCAG), other amplicon would be recognized as DNA sample other than library. 5.2 Requirements for Sample Shipment: 5.2.1 Sample Packing 5.2.1.1 For DNA and RNA samples, 1.5 mL Eppendorf tube is recommended (0.2 mL thin wall PCR tube / 8-strip tube is easy to break). To protect the tube from being crushed by the squeezing during sample shipment, which may result in sample damage, the Eppendorf tube is preferably placed in a 50 mL centrifuge tube or other strutting. Clean wipe or absorbent paper can be used for fixation. (Please do not add any liquid nitrogen or other hazardous materials into the 50 mL tube and other props) (Figure 1: Put Some Cotton in the 50 mL Tube or Use Capsule to Fix the Tube) 5.2.1.2 For tissue samples, 1.5 mL Eppendorf tube or 2 mL screw cap tube is recommended. 25 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 26/39 5.2.1.3 Please use parafilm membrane to seal the tube in transfer. Samples are not recommended to be dissolved in organic solvents like absolute ethanol or isopropanol because it may lead to leakage or even cross contamination. If it is necessary to transfer samples dissolved in organic solvents, please seal the nozzle of tube with at least 5 circles with parafilm membrane and screw cap tube is recommended. (Figure 2: Seal the Tubes with Sealing Membrane) 5.2.1.4 For blood samples, it can be transferred with a 5 to 10 mL anticoagulative tube. Please fix the anticoagulative tube in foam and space out each other to avoid collision. The plastic anticoagulative tube is suggested to using. 5.2.1.5 In the case of samples in large amount (more than 15 samples), please adopt a frozen storage box to protect the sample from damage. 5.2.2 Sample Identification 5.2.2.1 Do not mark a name and other information directly on the tube wall or lid with an oil pen. It is better to write the information on a label with an oil pen and stick the label to the tube wall with scotch tape wrapping the tube for one circle (by preventing the sample name from being dissolved by organic solvents and preventing the label from falling off, to avoid a failure of sample application) . 26 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 27/39 (Figure 3: Write a Label and Wrap it to the Tube Wall with Film) 5.2.2.2 Please attach a standard sample information sheet (both electronic and text versions) provided by our institute when mailing samples. Please make sure that the sample name and the quantity demanded in the sample information sheet are the same with that accompanied with the mailing samples. 5.2.3 Sample Transportation Requirements 5.2.3.1 DNA sample that is precipitated by ethanol can be transferred in normal temperature. Otherwise, transfer it in dry ice within 72 hours or ice bags within 24 hours. 5.2.3.2 RNA and tissue samples should be transferred in dry ice within 72 hours no matter what kind of solvent they are dissolved in. 5.2.3.3 Blood plasma should be preserved in dry ice and to ensure that there is sufficient dry ice left when the sample arrives at the destination, and it should be stored in a refrigerator at -80 oC in time. The sample must not be placed at room temperature. If Whole blood transferred in biological ice bags, should be within 12 hours. 5.2.3.4 The quantity of dry ice and ice bags varies with season, length of travel time and thickness of foam box. (Try to use massive dry ice for it is slow to volatile and better for keeping temperature. If possible, leave some cotton in the foam box above and underside to seclude heat during mailing. ) 5kg/day of dry ice is enough. 5.2.3.5 After BGI receiving samples, DNA or Library stored at -20 oC refrigerator, RNA or tissue stored at -80 oC refrigerator. The special conditions for sample storage, COs please describe the correct storage temperature in the information sheet. Antibodies, Primers, and Probes sent along with the samples also need to specify the corresponding information of stored temperature. 27 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 28/39 5.2.4 Sample Transport and Receiving a) If the samples are sent directly by COs, Project Coordinator shall be responsible for contacting COs about receiving matters, instructing COs to fill in sample information sheet correctly and at the same time sending email to the person in charge of receiving the sample. Notes: For contact details, see at the appendix. b) Please be reminded that all samples have to send to the following address: 2/F, 16th Dai Fu Street, Tai Po Industrial Estate, Tai Po, Hong Kong. Please do not send the shipments to other address (such as airport), which may cause loss of shipment/ delayed delivery. After the samples have been picked up, please send the name of courier, tracking no. and sample information sheet to our HK colleague April Wong ([email protected]) immediately. With the information, BGI will help to track for the shipping status and facilitate the importation progress. c) To send the DNA samples to Hong Kong, an official and signed declaration letter will be needed for Hong Kong Custom. In the letter, please give a general description of samples (e.g. source/ usage/ quantity) and clarify the samples are neither hazardous, infectious, HIV positive, dangerous, toxic nor radioactive. Appendix will be a sample letter for your reference. Please attach the declaration letter onto the shipment when sending out, and the samples should have no problems with Custom clearance. Form 12: Declaration Letter 28 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 29/39 Declaration Letter Sample (Letterhead of the company) (Date) To whom it may concern, This is to certify that the shipment contains (Quantity and type of sample. e.g. 10 DNA samples) that is for Research Purpose Only. The samples are derived from (source of sample e.g. human). They are (prepared in laboratory/ purchased from commercial company). All the materials are not hazardous, not infectious, not HIV positive, not dangerous not toxic and not radioactive. The materials will be destroyed by autoclave after experiments. No import license is required for this shipment. I hereby agree to send the about materials to BGI-HongKong Co., Ltd for research purpose. Thank you for your attention. Yours faithfully, (Signature) (Name) (Title) d) To send the Tissue/ Blood samples to Hong Kong (the samples must be non-infectious), an import license will be required. Please help to prepare the following information and send to: [email protected] for application: i. Name of Samples ii. Quantity of Samples (e.g. 5 μg each, 5 samples in total) iii. Courier going to use iv. Expected Importation Date v. Declaration Letter (sample letter attached: Declaration letter tissue sample) vi. Method of packaging And also send the Tissue/ Blood samples to Hong Kong, an official and signed declaration letter will be needed for Hong Kong Custom too. 6. Relevant Documents None 29 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 7. Relevant Records None 8. Reference None 9. Appendix Appendix I: DNA Sample Information Sheet (Template) Appendix II: RNA Sample Information Sheet (Template) Appendix III: Tissues Sample Information Sheet (Template) Appendix Ⅳ: Library Sample Information Sheet (Template) Appendix Ⅴ: Contact Information and Cautions Appendix A Revision Record 30 Page: 30/39 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 31/39 Version NO.:A4 Appendix I: DNA Sample Information Sheet (Template) Information of DNA Samples Note: Filling in this form with detailed and accurate information is the first step for us to serve you better, thank you for your cooperation! (*means compulsory information) Contract Number HSZ00001 Project Name Name of Client* Zhang San Company/Institute* Telephone* 13711xxxx21 BGI Coordinator NGS Platform* Project Type* ■ 1. HiSeq 2000 □ 2. 454 GS FLX+ Scientific Service Project of denovo sequencing of four samples Huasheng Basic Medicine and Medical Technology Zhao Wu □ 3. Others: ■ 1. Standardized project □ 2. Customized project (Customized type: ) Analysis type* ■ 1. De Novo Sequencing ( ■ ≤800bp insert normal library, □ ≤800bp insert PCR free library, □ 2K insert library, □ 5-6K insert library, □ 10K insert library, □ 20/40K insert library ) □ 2. Whole Genome Re-sequencing ( □ ≤800bp insert normal library, □ ≤800bp insert PCR free library, ) □ 3. MeDIP Sequencing or Bisulfite Sequencing □ 4. Reduced Representation Bisulfite Sequencing (RRBS) Sample Information: Type*: ■ Genomic DNA □ ChIP-seq DNA samples □ 5. ChIP Sequencing □ 6. RAD Sequencing □ 7. Exome Sequencing or Target Region Sequencing □ 8. Genotyping □ 9. Metagenomic Sequencing □ 10. Meta 16S rDNA V3/V6 Sequencing □ 11.Others: □ PCR products □ Broken into short fragments □ Others: . Condition*: ■ Dissolved in water □ Dissolved in TE Buffer □ Dry powder □ Dissolved in pure ethanol □ Others : . The main ingredient of the sample*: 80% water, 20% DNA (e.g. 10% water, 75% pure ethanol, 15% DNA) Treat by RNase: □ Yes ■ No Sample Name* Species No. of Tubes* Concen -tration (ng/μL) Volume (μL) Total Quantity (μg) F3 human 1 500 100 F4 human 1 500 100 31 Fragme -nt Size OD260/ 280 OD260/ 230 50 1.8 2.0 50 1.8 2.0 Remarks F3,F4 need separate detection; Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 32/39 Version NO.:A4 Appendix II: RNA Sample Information Sheet (Template) Information of RNA Samples Note: Filling in this form with detailed and accurate information is the first step for us to serve you better, thank you for your cooperation! (*means compulsory information). Contract Number HSZ00001 Project Name Name of Client* Zhang San Company/Institute* Telephone* 13711xxxx21 BGI Coordinator NGS Platform* ■ 1. HiSeq 2000 □ 2. 454 GS FLX+ Scientific Service Project of Small RNA sequencing of four samples Huasheng Basic Medicine and Medical Technology Zhao Wu □ 3. Others: ■ 1. Standardized project □ 2. Customized project (Customized type: Project Type* Analysis type* ■ 1.Small RNA □ 2.RNA-Seq (Quantification) □ 3. RNA-Seq (Transcriptome) □ 5.Digital Gene Expression Tag Profiling □ 6. Degradome sequencing □ 7. LncRNA-Seq □ 8. Others: □ 4. TruSeq (Transcriptome) Type: ■ total RNA □ ds cDNA □ Remove rRNA and mRNA □ Remove rRNA □ Others: . Condition : ■ Dissolved in RNase-free water (or DEPC treated water) □ Dissolved in TE Buffer Sample Information* □ Dry powder ) □ Dissolved in __% pure ethanol □ Others: . The main ingredient of the sample: 20% water, 80% RNA (e.g. 10% water, 75% pure ethanol, 15% RNA) Type of Species: □ Plants □ Lower Organism(Insects, Molluscs, etc) ■ Other Eukaryotes □ Prokaryotes □ Others: Sample Name* Species* No. of Tubes* Concen -tration (ng/μL) Volume (μL) Total Quantity (μg) F3 human 1 500 100 50 F4 human 1 500 100 50 32 OD260/ 280 OD260/ 230 28 S/18 S Remarks F3,F4 need separate detection; Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Page: 33/39 Version NO.:A4 Appendix III: Tissues Sample Information Sheet (Template) Information of Tissues Samples Note: Filling in this form with detailed and accurate information is the first step for us to serve you better, thank you for your cooperation! (*means compulsory information) Contract Number HSZ00001 Project Name Name of Client* Zhang San Company/Institute* Telephone* 13711xxxx21 BGI Coordinator ■ 1.HiSeq 2000 □ 2. 454 GS FLX+ NGS Platform* Scientific Service Project of Small RNA sequencing of four samples Huasheng Basic Medicine and Medical Technology Zhao Wu □ 3. Others: RNA Extraction ■ □ □ □ □ □ Analysis Type* DNA Extraction □ 1.De Novo Sequencing □ 2.Whole Genome Re-sequencing □ 3.MeDIP Sequencing or Bisulfite Sequencing □ 4.ChIP Sequencing □ 5. RAD Sequencing □ 6.Exome Sequencing □ 7. Metagenomic Sequencing □ 8.Others: 1.Small RNA 2.RNA-Seq (Quantification) 3. RNA-Seq (Transcriptome) 4. TruSeq (Transcriptome) 5.Digital Gene Expression Tag Profiling 6. Others: □ Cell Type: ■ Tissue □ Bacteria □ Whole blood (including lymphocyte) Sample Information* □ Serum □ Others: . Condition:■ Living organism □ Fast-frozen tissues □ Lysis tissues □ Preserved in RNAlater □ Others: . Samples with Pathogenicity, Infectivity * ■ No Laboratory Environment* ■ Common Laboratory □ P2 Laboratory (Bio-safety Cabinet) □ Yes (Description of the risks: ) Detailed Extraction Protocols * Sample Name* Species* No. of Tubes* Total Quantity F3 F4 Time of collection * Grapes 3 10g 2011.03.10 Yes Grapes 3 10g 2011.03.10 Yes 33 Do multiple vials contain same species? (yes/no)* Remarks Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 34/39 Appendix Ⅳ: Library Sample Information Sheet (Template) Information of Library Samples Note: Filling in this form with detailed and accurate information is the first step for us to serve you better, thank you for your cooperation! (*means compulsory information) Contract Number HSZ00001 Project Name Scientific Service Project of denovo sequencing of four samples Name of Client* Zhang San Company/Institute* Huasheng Basic Medicine and Medical Technology Telephone* 13711xxxx21 BGI Coordinator NGS Platform* ■ 1. HiSeq 2000 □ 2. 454 GS FLX+ Zhao Wu □ 3. Others: Analysis type* ■ 1. Transcriptome Library □ 2. Expression Library □ 3. Small RNA Library □ 4. ChIP Library □ 5. Exome Capture Library □ 6. DNA Short Fragment Library(0-499 bp) □ 7. DNA Long Fragment Library(500-800 bp) □ 8. DNA Large Fragment Library(≥800 bp) □ 9. Methylation Library □ 10. Rapid DNA library(454) □ 11. Rapid cDNA library(454) □ 12. Amplicon Library(454) □ 13. Others: Information of samples: Condition*: ■ Dissolved in water □ Dissolved in TE Buffer □ Dissolved in pure ethanol Method* □ Others : □ Dry powder . □Illumina kit (kit code and type):_________________ ■non-Illumina kit(In such a case, the preparation method, the used kit and its brand, and the sequence of the adaptor and PCR primers, and expected size of the libraries are required information. If the library contains index, the position of the index and the index sequence need to be indicated.) PEI library PCR primer sequence 5’AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT 5’CAAGCAGAAGACGGCATACGAGATNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT where N6 is the index. Special sequence*:■No; □Yes;(For PCR products or samples with specific sequence inserted, please indicate it on the Sample Information Sheet) GCcontent: 34 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Sample Name* HCC13 Species* Human No. of Tubes* 1 Concentration (ng/μL) Version NO.:A4 Page: 35/39 Volume (μL) Total Quantity (μg) Librariy Fragment size* Library Type (PE/PE_index/SE /SE_index) * 20 0.264 200-300 PE 13.2 Remarks (Kit.Brand) If you are sending the primer(s), please fill in the following form. Primer Name No. of Tubes Prime 1 1 ■ 1. Read 1 primer □ 2. Read 2 primer □ 3. Index primer Prime 2 1 □ 1. Read 1 primer ■ 2. Read 2 primer □ 3. Index primer □ 1. Read 1 primer □ 2. Read 2 primer □ 3. Index primer Primer Type 35 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Appendix Ⅴ: Contact Information and Cautions 1. Contact Information a) Address of HongKong Address 2/F, 16th Dai Fu Street, Tai Po Industrial Estate, Tai Po, Hong Kong Consignee’s Name Tel E-mail BGI-HongKong Co., Ltd ATTN: Ms. April Wong 852-3610 3511/ 852-9683 9836 [email protected] Please be informed that HK has no postal/ zip code. To avoid delay, please advise the client not Remarks to put China/ CN in the address. In case “Country” must be filled, please just put down “Hong Kong” 36 Page: 36/39 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 37/39 Appendix A Revision Record No 1 2 Revised People Accreditation People 2012-12-10 (1) Supplement requirements for Thallus sample quality(5.1.4.1); (2) Supplement instructions of storage temperature when BGI received the sample(5.2.3.5); (3) Supplement important instructions of sample transport(5.2.4); (4) Revise specification of ChIP-Seq sample(5.1.1.3); (5) Revise requirements for sample quality(5.1.1;5.1.3); (6) Delete Degradome (5.1.3). Zhang Ke Li JingXiang 2012-03-30 Supplement: 1. Supplement Declaration: For any infectious sample (tissue, blood, bacterium etc), clear risk sign must be attached on the sample tubes or bags(5.1.2, 5.1.4); 2. Supplement RAD-Seq sample requirement for HiSeq-DNA(5.1.1.1, Form 1), Concentration for SOLiD-DNA(Form 2), Sample requirement for 454 GS –DNA (Form 3); 3. Requirements of Meta, Thallus, Bacterium Fluid for DNA Tissue Samples(Form 4); 4. Requirements of ChIP-Seq cell samples(5.1.2.2); 5. Requirements of Degradome for HiSeqDNA(Form 5); 6. 2100 with RNA Integrality(5.1.3.6); 7. Supplement requirements for RNA Tissue Sampling(5.1.4.2); 8. Requirements for SOLiD and 454 GS Library sample quality (Form 8, 9, 10). Revise: 1. Concentration of EXON for HiSeq-DNA: c≥50ng/μL be revised as ≥30ng/μL(Form 1); 2. Requirements of DNA Insert 5-10kb for DNA Tissue Samples: ≥3g be revised as ≥5g; DNA Insert ≥20kb: 3-5g be revised as ≥10g(Form 4); 3. Revise all OD260/280 of Plant, Fungi total RNA for HiSeq-RNA: 1.8≤OD260/280≤2.2 be revised as OD260/280≥1.8(Form 5); 4. Revise all requirements for HiSeq Library sample quality (Form 7). Zhang Ke Yin Ye Date Revision Contents 37 Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 38/39 3 2012-06-21 Supplement requirements of 16S rDNA V3/V6 PCR Free, RRBS and Fosmid/BAC Library for HiSeq-DNA samples; Revise Concentration of EXON Nimblegen Array (one sample for hybridization) and Genotyping for HiSeq-DNA samples. (Form 1) 4 2012-06-21 Supplement requirements of OD value for 454 GS FLX+ DNA samples. ( Form 3) Cheng Lei Yin Ye 5 2012-06-21 Supplement requirements of Microorganism Wang Juan Samples for DNA Tissue Samples. (5.1.2.2) Yin Ye 6 2012-06-21 Supplement requirements of 454 GS FLX+ RNA samples. ( Form 6) Cheng Lei Yin Ye 7 2012-06-21 Supplement Declaration: RNA samples. (5.1.3.5) Chen Cui Yin Ye 8 2012-06-21 Revise requirements of Microorganism and Serum for RNA Tissue Samples. (5.1.4.2, 5.1.4.3) Tan XueMei Yin Ye 9 2012-09-14 Revise requirements of concentration for Exon samples. (Form 1) Ding Fen Yin Ye 10 2012-09-14 Revise requirements for HiSeq library samples. (Form 8) Chen ChengCao Yin Ye 11 2012-09-14 Supplement requirements primers. (Form 12) sequencing Chen ChengCao Yin Ye 12 2012-09-18 Supplement requirements of (Transcriptome) samples. (Form 5) TruSeq Ou YanXiang Yin Ye 13 2012-09-18 Supplement declaration of 454 GS FLX sequencing primer. (5.1.5) Cheng Lei Yin Ye 14 2012-09-22 Revise requirements for RAD-Seq samples. (Form 1, 5.1.1.5) Wang MingHua Yin Ye 15 2012-12-26 Supplement purity requirements of 16 S rDNA Su XiaoShan Hu ZhenFei For V3/V6 PCR Free samples. (From1) 38 Low-quality of Wang Juan; Liu YuXiang; Ding Fen Yin Ye Suggestions for Sample Delivery(NGS) File NO.: BGI-NGS-SOP10-002 Version NO.:A4 Page: 39/39 16 2012-12-26 Supplement purity requirements of RRBS samples. (From1) He DongLing Hu ZhenFei 17 2012-12-26 Supplement requirements of LncRNA-Seq. (Form4) Chen Cui Hu ZhenFei 18 2012-12-26 Revise consignee of contact information. (Appendix Ⅴ) Yuen KaLeung Hu ZhenFei 39
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