Entry Feature Location Qualifier

Sample Annotation File: TSA (Transcriptome Shotgun Assembly)
primary entries are from short reads registered in SRA
This line is not required for annotation file.
Entry
Feature
COMMON DIVISION
KEYWORD
Location
DBLINK
Common information of all entries
SUBMITTER
Enter DIVISION "TSA"
KEYWORD "TSA" and
"Transcriptome Shotgun
Entry name should be unique to
all entries, i.e. clone name,
isolate name, etc. and identical
to the one in the sequence file.
REFERENCE
ST_COMMENT
Second
entry
First entry
FA01
FA02
DATE
source
1..800
CDS
73..669
source
1..2560
Qualifier
division
keyword
keyword
project
biosample
sequence read archive
contact
ab_name
ab_name
email
phone
fax
institute
department
country
state
city
street
zip
ab_name
ab_name
title
year
tagset_id
Assembly Method
Sequencing Technology
status
hold_date
organism
mol_type
note
tissue_type
gene
product
codon_start
organism
mol_type
tissue_type
note
Value
TSA
Enter three qualifiers, "project" for
TSA
BioProject
Transcriptome Shotgun
AssemblyID, "biosample" for
BioSample ID and "sequence read
PRJDB43210
SAMD70000000
archive" for accession number of the
DRR999999
Run Data issued by SRA databases,
Hanako Mishima
on DBLINK line, respectively.
Mishima,H.
Yamada,T.
[email protected]
81-55-981-6853
81-55-981-6849 "contact" is mandatory.
National Institute ofEnter
Genetics
the full name.
DNA Data Bank of Japan
Japan
Enter the date to withhold
Shizuoka
your data. If the data should
Mishima
be publicized immediately,
Yata 1111
delete the DATE line.
411-8540
Mishima,H.
Yamada,T.
Enter the
ST_COMMENT
which
Glyceraldehyde-3-phosphate
dehydrogenase
of by
human
2013
depends on the submitted
Assembly-Data
sequences. For eukaryotic genome
Velevt v. 2.0
entry(ies), "assembly name" qualifier
454 GS FLX; ABI 3730
is mandatory. Please see the Mass
Unpublished
Submission System Making Files
20141130
(COMMENT) for details.
Homo sapiens
mRNA
contig: FA01
liver
GAPD
"PRIMARY_CONTIG" lines are
glyceraldehyde-3-phosphate
not dehydrogenase
needed when the TSA
1
sequence is assembled by raw
Homo sapiens
read sequence deposited in
mRNA
the SRA databases.
liver
contig: FA02