National DNA-library?
A pilot collaborative study by the Swedish Agency for
Marine and Water Management and SLU – Swedish
Species Information Centre
Malin Strand
SLU Barcoding network
Barcoding starts with a specimen
with an identified species name.
That is the tricky part!
2006-2009 marine inventory Sweden: 1200
species, 75 not known from Sweden (incl. 29
new to science)
ID:d specimens preserved in ethanol!!!
2014-2015 DNA library starts
2015-2016 Barcoding is tested in
marine monitoring?
???
Research
contribution to
library
No match? Fuzzy
match? Research
1200
species
Bivalvia &
Echinodermata
Current status: 140 species/400
specimens sent to Canada
Success rate? Validation?
BOLD-konto administreras
Malin
Katrine
Malin
Kevin
first batch valid barcodes May 2015?
SHARK – most common sp
in marine monitoring
Which species in focus
next round?
IT infrastructure! GNM GNM ZOO databas Prover från Sekvenser GNM >ll iBOL/
BOLD Bilder Morphbank Bilder Naturarv migrering Specify data bas Voucherdata DNA-‐nyckeln BOLD + Genbank Naturforskaren 5 000 000
inventory
7 000 000
800 000 financial
support to
museums
300 000
2 000 000
a common national collection management
system
2 500 000
SweBOL
•  Swedish Barcode of Life
•  Recently started secretariat (small scale, part
time!) at the Swedish Museum of Natural
History
•  Much to think of! Aim? Function? Strategy?
Hosting organisation? Etc etc…
•  Ongoing collaboration w NorBOL works fine!
National DNA-library?
A pilot collaborative study by the Swedish
Agency for Marine and Water Management and
SLU – Swedish Species Information Centre
Malin Strand
SLU Barcoding network
CGI: cost efficient to do 96 samples (2days) from tissue.
Between 6000-8000 SEK from tissue to validated barcode (taxon-ID).
Vi kommer då:
utföra analyser med angiven kvalitétssäkring,
tolka och analysera resultat,
lagra DNA-extrakt tillsvidare,
lagra överblivna prover ett år,
lagra resultat och data digitalt i tre år efter överenskommelsens utgång,
lagra data i referensbibliotek,
samlingsföra prover om det är intressant för Naturhistoriska riksmuseet.
Rumohr, H, Brey & Ankar 1987. A Compilation of
Biometric Conversion Factors for Benthic Invertebrates
of the Baltic Sea.
The Baltic Marine Biol. Publ. sid 1-56.
Thank you for your attention!
Collaborators:
GU - University of Gothenburg
SLU - Swedish university of agricultural sciences
NRM - Swedish Museum of Natural History
GNM - Gothenburg museum of natural history
HaV - Swedish Agency for marine and water management