Registration Opens
1:00 pm
Mantra Lobby
Welcome Address
4:00 pm - 4:10 pm
Richard Simpson, President Australasian Proteomics Society
Heritage Ballroom
Keynote Lecture
4:10 pm - 5:00 pm
Heritage Ballroom
Chair: Richard Simpson
Marius Ueffing
Quantitative analysis of protein complexes over space and time abs#001
Ken Mitchelhill Young Investigator Award Lecture
5:00 pm - 5:45 pm
Heritage Ballroom
Session sponsored by
Chair: Richard Simpson
Suresh Mathivanan
Are biologically active exosomes stable in blood plasma? abs#002
Symposium One: Students of APS (SoAPS)
5:45 pm - 7:00 pm
Chairs: David Greening, Stuart Cordwell
5:45 PM
6:00 PM
6:15 PM
6:30 PM
6:45 PM
Heritage Ballroom
Session sponsored by
Christina Yip
First report of differences in the TRAP-stimulated platelet releasate between children and
adults using two dimensional Differential-In-Gel Electrophoresis (2D-DIGE)
Juan Martinez-Aguilar
Selected reaction monitoring to assay the S100 protein family in colon and thyroid
Ruth Fuhrman-Luck
Determination of the kallikrein-related peptidase 4 degradome in prostate cancer
identifies novel cancer-associated functions
Benjamin Raymond
Global analysis of protein-protein interactions important for the virulence of Mycoplasma
Katherine Wongtrakul-Kish
Adipose-Derived Stem Cell Differentiation: Changes in the Membrane Glycome and
Welcome Reception
7:00 pm - 10:00 pm
Exhibition Hall
Session sponsored by
Breakfast Workshop (Thermo Fisher Scientific)
7:30 am - 9:00 am
Symposium Two: Post-translational Modifications
9:00 am - 10:30 am
Chairs: Andrew Webb, Stuart Cordwell
Heritage Two
Heritage Ballroom
Session sponsored by
Don Hunt
Innovative instrumentation and technology for the characterization of intact proteins on a
chromatographic time-scale
Benjamin Parker
Phosphoproteomics with data-independent mass spectrometry reveals novel features of
insulin action
Rob Parker
Phosphoproteomics of the cellular response to MAPK blockade in V600E BRAF mutant cells
9:00 AM
9:40 AM
10:00 AM
Morning Tea
10:30 am - 11:00 am
Exhibition Hall
Symposium Three: Interactome / Systems Biology
11:00 am - 12:30pm
Chairs: Mark Wilkins, Michelle Hill
Session sponsored by
Anne-Claude Gingras
Dynamic signalling interactomes in health and disease
Marc Wilkins
Lysine and Arginine Methylation Modulate Protein-Protein Interactions in Intracellular
Derek Wilson
Conformational Disorder in Protein Function and Pathogenic Aggregation
11:00 AM
11:40 AM
12:00 PM
Lightning Talks One
12:30 pm - 1:00 pm
Chair: Ben Crossett
1st –
2nd 3rd 4th –
5th –
6th –
Heritage Ballroom
Heritage Ballroom
Session sponsored by
Laura Dagley
Automated sample preparation via rapid on-line trypsin digestion prior to mass spectrometry
Krishneel Singh
The surface characterisation of rat adipose derived stem cells for bone tissue engineering abs#102
Mark Ritchie
Data independent LC-IM-MS strategies for the multi-omic scale identification and quantitation on
cytochrome P450 transfected hepatocytes abs#103
Benjamin Lau
The chromoplast proteome of oil palm fruit
Samira Aili
Characterising the peptide and protein diversity of Neotropical and Australian ant venoms and the
identification of novel peptide toxins for bio-insecticide discovery abs#105
Kasper Engholm-Keller
Signal integration by protein phosphatase regulatory proteins mediate changes to the synaptic
vesicle cycle
These 6 lightning talks will be the first 6 posters in poster session one.
Notices - Erskine Walk Tour Information - Nick Williamson
Lunch / Poster Session One
1:00 pm - 2:30 pm
Erskine Bus / Walk Tour
2:00 pm – 3:30 pm
Exhibition Hall
Mantra Lobby
Symposium Four: Trafficking and Vesicles
5:00 pm - 7:00 pm
Chairs: Richard Simpson, Andrew Hill
5:00 PM
5:30 PM
6:00 PM
6:30 PM
Heritage Ballroom
Session sponsored by
Andrew Hill
The role of exosomes in neurodegenerative diseases
Jens R. Coorssen
Vesicular 'Omics: Defining the release-ready and Ca2+-triggered fusion steps of regulated
Dolores Di Vizio
Functional and quantitative proteomic analysis of two distinct populations of extracellular
vesicles from the same cell source
Dominque de Kleijn
Plasma extracellular vesicles proteomics identifying prognostic and diagnostic
cardiovascular biomarkers
Students of the APS (SoAPS) Dinner with Invited Speakers
7:30 pm – 9:00 pm
Mantra Dining Area
Breakfast Workshop (AB SCIEX)
7:30 am - 9:00 am
Heritage Two
Symposium Five: Emerging Technologies
9:00 am - 10:40 am
Chairs: Peter Hoffmann, Nick Williamson
Heritage Ballroom
Katie Southwick
Targeted Protein Quantification Using High Resolution and Accurate Mass: A More Selective
and Higher Throughput Way to Precisely Determine the Amount of Your Protein of Interest
9:00 AM
Jeremy Wolff
Characterization of Biomolecules with electron detachment dissociation and negative
electron transfer dissociation
Stephen Tate
Mapping differential interactomes by affinity purification coupled with data-independent
mass spectrometry acquisition abs#020
Christine Miller
IMS-MS Analysis of Transmembrane Spanning Peptides
Srinath Krishnamurthy
Solving the data analysis bottle neck in Hydrogen Deuterium Exchange MS experiments
9:20 AM
9:40 AM
10:00 AM
10:20 AM
Morning Tea
10:40 am - 11:00 am
Symposium Six: Clinical / Disease Proteomics One
11:00 am - 12:15 pm
Chairs: Hubert Hondermarck, Tony Purcell
Exhibition Hall
Heritage Ballroom
Session sponsored by
Maxey Chung
Stathmin-1 in colorectal cancer metastasis: From proteomics to functional and
mechanistic studies abs#023
11:30 AM
Patricia Illing
Prospecting for polymorphisms: high resolution mass spectrometry elucidates distinct
peptide-binding capacities across allelic variants of Human Leukocyte Antigens abs#024
11:45 AM
Peter Hoffmann
Autoantibody biomarkers for the detection of early stage ovarian cancer abs#025
12:00 PM
Swetlana Mactier
Identification of Protein Markers for Survival in Lymph Node Metastases from Stage III
Melanoma Patients abs#026
Lightning Talks Two
12:30 pm - 1:00 pm
Heritage Ballroom
Chair: Ben Crossett
Session sponsored by
11:00 AM
1st –
2nd 3rd 4th –
5th –
6th –
Giuseppe Infusini
The hunt for wound healing factors in plasma: a label-free quantitation application to target
discovery proteomics
Thilo Bracht
Proteome analysis of a hepatocyte-specific BIRC5-knockout mouse model during liver regeneration
Karlie Neilson
Quantitative proteomic analysis of compensatory pathways in yeast deficient of the thiamine
biosynthetic enzyme, Thi4 abs#203
Michelle Hill
Online Quantitative Proteomics p-value Calculator for Permutation-Based Statistical Testing of
Peptide Ratios
Anup Shah
Mammalian Lipid Raft Proteome Database
Fiona Durand
The induction of plasma membrane proteins in response to stress
These 6 lightning talks will be the first 6 posters in poster session two.
Lunch / Poster Session Two
1:00 pm - 2:30 pm
Exhibition Hall
Passport Award Ceremony
2:15 pm
Exhibition Hall
Symposium Seven: Biological Applications of Proteomics One
2:30 pm - 3:45 pm
Heritage Ballroom
Chairs: Ben Crossett, Steven Djordjevic
Session sponsored by
2:30 PM
3:00 PM
3:15 PM
Albert Sickmann
Systematic characterization of human platelets in arterial vascular disorders by
quantitative proteomics
Andrew Webb
Crosslinking and HDX identify a second, decoration-independent, binding interface is the
site for actin filament severing by ADF/Cofilins
Nathan Croft
Systems biology analysis of virus-host interactions: kinetics of antigen and epitope display
3:30 PM
Vera Ignjatovic
Differences in platelet proteome and secretome between children and adults: the role in
protection from thrombosis and cardiovascular disease
Coffee Break
3:45 pm - 4:15 pm
Symposium Eight: Clinical / Disease Proteomics Two
4:15 pm - 5:45 pm
Chairs: Mark Molloy, Lou Fabri
Exhibition Hall
Heritage Ballroom
Session sponsored by
4:15 PM
Kai Stϋhler
Aging – Identification of proteins associated with in situ aging using a quantitative
proteome approach
4:45 PM
Srinath Krishnamurthy
How enzymes access caged substrates? Monitoring hydrolysis of receptor-bound cyclic AMP
by phosphodiesterases using amide hydrogen/deuterium exchange mass spectrometry
5:00 PM
Tai-Long Pan
Vimentin modulates invasion and metastasis in human hepatocellular carcinoma cells
5:15 PM
5:30 PM
Ralf Schittenhelm
Deciphering the HLA B27 immunopeptidome
Allan Stensballe
Discovery and targeted proteomics in the light of the eye
APS Carnival
7:00 pm – 12:00 am
Session sponsored by
Mantra Dining & Seagrass Lawn Area
Breakfast Workshop (Waters)
7:30 am - 9:00 am
Heritage Two
Breakfast Workshop (Thermo Fisher Scientific)
7:30 am - 9:00 am
Heritage Two
Symposium Nine: (Bio)informatics
9:00 am - 10:30 am
Chair: Shoba Ranganathan, Michelle Hill
9:00 AM
Heritage Ballroom
Session sponsored by
Shoba Ranganathan
Unlocking the Puzzling Biology of the Black Périgord Truffle Tuber melanosporum
9:30 AM
9:50 AM
10:10 AM
Shivashankar Hiriyur Nagaraj
A novel, integrated software for proteogenomics
Jason Wong
Proteogenomics analysis identifies mutation specific post-translational
modifications and novel proteins in human cell lines
Chi Nam Ignatius Pang
Tools to Covisualize and Coanalyze Proteomic data with Genomes and
Transcriptomes: Validation of Genes and Alternative mRNA Splicing
Morning Tea
10:30 am - 11:00 am
Symposium Ten: Biological Applications of Proteomics Two
11:00 am - 12:15 pm
Chairs: Bill Jordan, Steven Djordjevic
Session sponsored by
11:00 AM
11:40 AM
Exhibition Hall
Heritage Ballroom
Helmut E Meyer
Tissue Based Proteomics for Biomarker Discovery abs#040
Brad Walsh
Identification of the MIL-38 target antigen for the diagnosis of prostate cancer
11:55 AM
Ben Herbert
Serum and urine biomarkers correlate with decreased cartilage degradation after
adipose stem cell treatment in double blind trial for knee osteoarthritis abs#042
Closing Ceremony / Award Presentation / AGM
12:20 pm - 1:00 pm
Chair: Richard Simpson
Heritage Ballroom
APS Annual General Meeting
1:10 pm - 1:45 pm
Chair: Richard Simpson
Heritage Ballroom
Buses Depart
Buses depart at 2:00 pm SHARP
Mantra Lobby